Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0135 ATGAAAATCCCGAATCCCATACTCACGCTCTTGGTCCTCTTGAACCCTCCCCTAGTACTGGCAAACATAGAAACATGTTCAGACAGCGTTTGCCAGGGTGGTGAGCCAGTAATCCGATTTCCCTTCCGCATAGAAGGAAAACACGCAGAACCATGCGGATACCCAGGCTTCATAGTCTCCTGCAATCACAACGCCCAAACACACCTCAACCTACCAAATTGGGGTCCACTCAAAATCCAAACTATAAACTACGCCGCGCAGCAACTGTGGGTCAACGATCCCGACAACTGCCTCCCCAAACGCCTCCTCTCTCTCAATCTCTCCACCTCTCCCTTCCGCGCCGTTTACCACCAGCAATTCACCTTCTTCAACTGCTCCGTCAATTTGCCCAACCTCGTTCGTCGATACCGTCCCATAGGTTGTCTCAGCGATTCTTCCAAGTACGCCGTTTTCGCCACGCCTTCTACGACTGTGGTTGGCCACTTGTCTTCCGTGTGTGATTTCGTGGCCACGGTGAAGGTGCCTGTGCAGTCACCGTTTTATGATCAAGTCACATCGTCGGAACTCGGCGAGGATCTGCGTCTCTCGTGGGATTCGCCGGCGTGCGGGAGGTGCGAGTCCCACGGTGGCAGGTGTGGCTTCAAGAGTGACGAGACTTTTGAGCTTGACTGTTATGGTTTCCCTTCGAAAGGGATTTCCCGTGGTGCCCGTTACGCCATAGCGATATGCATAGGCGTACCAGCTATGTTATGTTCCTTTGGAGTATTGAGTTGCATCTGCAGCTGGCTCAAAATGAGGAACCATGAAGGACCTTGGGCTCAGGAAACTGTGGCAGATTTTGAGGCTCTATCGGGCTCAAGGCCCACATTAGTGTTGGGCCTGGACAAACCCACAATCGAATCATACCCGAAAATAGTTATAGGTGAGAACAGACGGTTACCGAAGAAGGGTGAGAAAATGTGCTCAATATGTCTCTCAGAGTACATGCCAAAAGAGACAGTGAAAAGCATACCTGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCCTCCTGCCCAATCTGCCGAACTTCTCCCCGAAAGTTTCCACAACCTCGTGCTCGATCATCAACATAA 1137 0.5119 MKIPNPILTLLVLLNPPLVLANIETCSDSVCQGGEPVIRFPFRIEGKHAEPCGYPGFIVSCNHNAQTHLNLPNWGPLKIQTINYAAQQLWVNDPDNCLPKRLLSLNLSTSPFRAVYHQQFTFFNCSVNLPNLVRRYRPIGCLSDSSKYAVFATPSTTVVGHLSSVCDFVATVKVPVQSPFYDQVTSSELGEDLRLSWDSPACGRCESHGGRCGFKSDETFELDCYGFPSKGISRGARYAIAICIGVPAMLCSFGVLSCICSWLKMRNHEGPWAQETVADFEALSGSRPTLVLGLDKPTIESYPKIVIGENRRLPKKGEKMCSICLSEYMPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPRKFPQPRARSST* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0135 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 373 - -
Vra10g0135 378 Pfam Wall-associated receptor kinase galacturonan-binding 26 93 IPR025287 GO:0030247
Vra10g0135 378 Pfam Ring finger domain 319 363 IPR001841 -
Vra10g0135 378 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Vra10g0135 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 373 - -
Vra10g0135 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 367 IPR013083 -
Vra10g0135 378 Pfam Wall-associated receptor kinase C-terminal 161 225 IPR032872 -
Vra10g0135 378 SMART ring_2 321 362 IPR001841 -
Vra10g0135 378 SUPERFAMILY RING/U-box 320 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0135 Vra-Chr10 3906438 3909192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0135 24 366 C3H Transcription Factor Family AT2G46495 37.322 8.04e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0135 - - vun:114163980 723.776