Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0133 ATGTCGTCGACGGTGCTGGAAGTGACGCGGGCGGCACACGAGGAGGTTGAACGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGAGCCCGGCACCAACAAGGAGCGTTTGTATCAGAGTCACCGTGTGCGAAACATGATCGATACCATTACCTCCACCACTGAAAAGCTTATTGGGATATACGAAGATAACGACAATGCCAGGAAGGACGAGATTGCTGCACTCGGAGGCCAAACCGCCTCTGGAATTAACGTTTTCAGTGCCTTTTATGATAGACTCAAGGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGTGTTGTTGACGCCAATGATGATTATGAAACGGTTCTCAAAGAAGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTCTTGGTCGATACTTAGATCTGCATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGAGAGCCACTTGAGTATTCTGCATATCTTGATGTTTTCTCAGACACAAATAAGATTCCTCGCAAAATGAAAATGACCAGACAGTACCGAGAATATATGGTTAATCTTTTGGAGTATCTGATATACTTTTTCCAGCGTACCGAGCCACTGCAAGATCTTGATCGAATTTTCTCAAAGGTTACAGCTGAATTTGAAGAAAATTGGGCTGCTGGAAGGGTACGGGGATGGGAAAATGACAATCAGGAAAATGGACATGTACCTGCTGAGACCATTGATCTTGATTATTATAGTACTGTTGAAGAGCTGATAGAAGTGGGTCCTGAAAGGTTAAAGGAGGCTCTGGCTGCATTAGGGCTTAAGACTGGTGGTACTATTCAGCAACGGGCGGAGAGGCTCTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGAGAGGAAGCATTTTGTTAAGGGGACACGTGGTGTAGAAAAGAACAGGGTTGCTCCAGTTCCACAAGAAGATGGAAATTCTAAAGAAATTGCATTGATGGAAGCTAAAATGGAAAAACTGTGTGATTTGTTGGAGGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAACAGGCCCTAACATATGAAGAGATGGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACACTGAAAGCGAAGATGACGAGCAGCAGATATATAATCCCCTAAAATTACCAATGGGGTGGGATGGAAAACCTATACCTTATTGGCTATATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTATAGTTATTGGGGGCGTCGGGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCGAATACCAAGAATTTCAACGAAATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTACGAAGACAAAGAAGGCAACATCTATAATAAGAAAACATACACTGACTTACAGCGCCAGGGACTGATTTGA 1524 0.4357 MSSTVLEVTRAAHEEVERLERLIVKELQNEPGTNKERLYQSHRVRNMIDTITSTTEKLIGIYEDNDNARKDEIAALGGQTASGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYETVLKEEPQIEFSGEEALGRYLDLHELYYQYVNSKFGEPLEYSAYLDVFSDTNKIPRKMKMTRQYREYMVNLLEYLIYFFQRTEPLQDLDRIFSKVTAEFEENWAAGRVRGWENDNQENGHVPAETIDLDYYSTVEELIEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEKLERKHFVKGTRGVEKNRVAPVPQEDGNSKEIALMEAKMEKLCDLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDTESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0133 507 PANTHER SPLICING FACTOR SF3A-RELATED 1 507 - -
Vra10g0133 507 PANTHER BNAA03G01920D PROTEIN 1 507 - -
Vra10g0133 507 Coils Coil 329 349 - -
Vra10g0133 507 MobiDBLite consensus disorder prediction 359 380 - -
Vra10g0133 507 ProSiteProfiles Zinc finger matrin-type profile. 412 443 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vra10g0133 507 Pfam SF3a60/Prp9 C-terminal 388 507 IPR024598 GO:0000398|GO:0003723|GO:0005681
Vra10g0133 507 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Vra10g0133 507 Coils Coil 351 378 - -
Vra10g0133 507 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Vra10g0133 507 MobiDBLite consensus disorder prediction 361 380 - -
Vra10g0133 507 Pfam Replication stress response SDE2 C-terminal 224 302 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0133 1 507 C2H2 Transcription Factor Family AT5G06160 73.767 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0133 K12827 - gmx:100815393 943.34