Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0130 ATGATTATCAAGAGAAACTTGAAATCCCAAATGCCGAATCTGAAACGGGTCAAACTCGGTGACTCGGTGGGTGAGGACGACGATTGTTCCTACGCTCGAAAGAAGAGAAAGACCAACGGTTACTATCCTTTGAACCTTCTTGGCGACGTGATTCCGGTTAGTTTTCATGGACTGTTAGGCGCCAGCGTGTCGGATAAAGGGTTCTCTGCAACGTGGTGCACGCAGGTGTCGTGCAACGGAGTGGAATCGAACGCTAAACACAACGTCGTCGTTGAGGCGAAGAAGAAGAGCGAGGTTCAGCGGCCACCTCTAGTTAGGACTTCGAGGGGGCGAGTTCAAGTCCTGCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAAGAGAGCAAGAGTACTAGCGGCTTGCGTGATGGTGATTATGATGATGAGTTTGAATGCAAGAAGGAGAAGCTCAGCTTCAGGGCACCCAAGGTTTGCACTAATCAGAAGAAGGGAAAAAACGAGGAGAAAACAGGTACCAAGGCTCGTAAGTACTCGGCATTGTGCAAGAGTTATGAGAGGAGCAAGTGTTCCAGTTTGCCTGGTGGTGGGGCATTGGCCTTGAGGCATGGTGGGTTGGTGGTTGAAGAAGACGAGAAGGGAAGGTTTTTGGAGGTGGAAGGAGTTGGTTTGATGGGTTTGAAGGAGAATAGTGGGGAGAGGAGAAATGGGTTGTTTGGGCCAGAAGATTTTTATGCAGGTGACATAGTGTGGGCCAAAGCTGGGAGAAAGGAACCTTTTTGGCCTGCCATTGTTATTGATCCTATGACTCAGGCTCCTGAGTTGGTTCTCAGGTCTTGTATAGCTGATGCAGCTTGTGTCATGTTTCTTGGGTACGCGGGAAATGAGAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTGTGGATTATGTGGACAGGTTTCAGGGGCAGTCTGAGTTGAGTTTCTATAATCCTTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCGGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTACTAGCAATGGTTATGATGATTCCATTCTGAAAGCCTTTCAGGAGGTCACTCGTTCAAACCATTATGCAGGATATCGTTTTCTGAACCAGGATTTATTTGATAAGAAAGAGACGCGGCCCTGTGAAGCTTGTGGGTTGAACCTTCCTTACAAGATGTTAAAGAAGACAAGGGATTCAAGGTCCGGGGGCCAATTCCTATGCAGAACTTGTGCCAGGTTAACAAAATCAAAGCATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACGTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACATGCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAGGGTCACTGTTCTCTGCAATGGTGTGGAAGGTGTATATTTTCCAAGCCTTCATTCAGTTGTGTGCAAGTGTGGGTTTTGTGGGGCAGAAAAGCAAGCACTCAGTGAATGGGAACGACACACAGGTTCCAAATCAAGAAATTGGAGAACAAGCATTAGGGTGAAAGACTCCATGCTACCTTTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTATTGCTCAAGTTCCTGCCAAACCCAAGAAACCTTCTTTAAAAGAAAGAAAGCAGAAGCTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACTACAGAACGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTATAACAAAATTATCATTTGCATCAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGATTTTACTTCTTGGGTTTGTAAGGCTTGTGAAACGCCTCACATCAAGCGGGAGTGTTGTCTTTGTCCCGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTTGACACGCTATGGGTTCATGTAACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCATGTACACAATGTTGCAAGTGTTCGACTTATTTCCATGCCATGTGTGCATCGAGAGCCGGTTATCGAATGGAGTTGCATTGTTTAGAGAAAAATGGCAGGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGGGCTCCCAATCCAGATACTGTTTTGATTATGCAAACCCCGCTTGGGGTGATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAACTGGTTCAAGGTTAATCTCGTCTAACAGAAGAAAGCAAGATGTCACCCCTATTGATAACACCGAGCATGAGCCATTTTCTGCTGCCAGGTGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGAGAGCTGCGGATGAGGCTGTTTCTCACCAAGTGAGGGGTCACTATCACCATCCTTTAGATGCAATACAGAGTTTAAATGCACCCAGAGTGGTGCATGAGCCCCAGGCATTTTCTTCATTCAGAGAACGCCTTTACTACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTGAGACGCAGCATTGCAGATTTAAGGGAGGCACGCTATAGATTAGAAGGCAAAGATTGTTATCTGTTTAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGACAAAGGGAATATAGCACGGCTGATTAATCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGAGTGTCGGTGATGATGAGAGCCGGATTGTTCTCATTGCCAAGACTATCGTGTCTGCCGGGGATGAATTAACGTATGACTACCTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCCTGCCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3201 0.4445 MIIKRNLKSQMPNLKRVKLGDSVGEDDDCSYARKKRKTNGYYPLNLLGDVIPVSFHGLLGASVSDKGFSATWCTQVSCNGVESNAKHNVVVEAKKKSEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKSTSGLRDGDYDDEFECKKEKLSFRAPKVCTNQKKGKNEEKTGTKARKYSALCKSYERSKCSSLPGGGALALRHGGLVVEEDEKGRFLEVEGVGLMGLKENSGERRNGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMTQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFVDYVDRFQGQSELSFYNPSDFQMAIEEAFLAERGFTEKLIADINTAATSNGYDDSILKAFQEVTRSNHYAGYRFLNQDLFDKKETRPCEACGLNLPYKMLKKTRDSRSGGQFLCRTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKPHAKVKWNKNNGQLVLPNRVTVLCNGVEGVYFPSLHSVVCKCGFCGAEKQALSEWERHTGSKSRNWRTSIRVKDSMLPLEQWMLQLAEFHAIAQVPAKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICIRCQIAVHQECYGARNVRDFTSWVCKACETPHIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSNRRKQDVTPIDNTEHEPFSAARCRIFQRTNHTKKRAADEAVSHQVRGHYHHPLDAIQSLNAPRVVHEPQAFSSFRERLYYLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTIVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0130 1066 ProSiteProfiles SET domain profile. 924 1041 IPR001214 GO:0005515
Vra10g0130 1066 SMART PostSET_3 1050 1066 IPR003616 -
Vra10g0130 1066 ProSitePatterns Zinc finger PHD-type signature. 635 680 IPR019786 -
Vra10g0130 1066 ProSiteProfiles Post-SET domain profile. 1050 1066 IPR003616 -
Vra10g0130 1066 Pfam PHD-finger 440 493 IPR019787 -
Vra10g0130 1066 CDD PHD_TCF19_like 441 491 - -
Vra10g0130 1066 CDD ePHD_ATX3_4_5_like 689 800 IPR041955 -
Vra10g0130 1066 SUPERFAMILY Tudor/PWWP/MBT 241 350 - -
Vra10g0130 1066 MobiDBLite consensus disorder prediction 829 849 - -
Vra10g0130 1066 Pfam PHD-zinc-finger like domain 688 800 - -
Vra10g0130 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 683 IPR013083 -
Vra10g0130 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 496 IPR013083 -
Vra10g0130 1066 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1066 - -
Vra10g0130 1066 SMART PHD_3 634 681 IPR001965 -
Vra10g0130 1066 SMART PHD_3 745 801 IPR001965 -
Vra10g0130 1066 SMART PHD_3 440 492 IPR001965 -
Vra10g0130 1066 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Vra10g0130 1066 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1066 IPR025780 -
Vra10g0130 1066 SMART set_7 924 1047 IPR001214 GO:0005515
Vra10g0130 1066 MobiDBLite consensus disorder prediction 829 843 - -
Vra10g0130 1066 Pfam PHD-finger 647 681 - -
Vra10g0130 1066 SUPERFAMILY FYVE/PHD zinc finger 438 496 IPR011011 -
Vra10g0130 1066 Pfam SET domain 935 1040 IPR001214 GO:0005515
Vra10g0130 1066 SUPERFAMILY SET domain 914 1066 IPR046341 -
Vra10g0130 1066 Pfam PWWP domain 249 343 IPR000313 -
Vra10g0130 1066 ProSiteProfiles Zinc finger PHD-type profile. 438 494 IPR019787 -
Vra10g0130 1066 PANTHER PHD FINGER PROTEINS 1 1066 - -
Vra10g0130 1066 CDD PHD_ATX3_4_5_like 634 680 IPR042011 -
Vra10g0130 1066 Gene3D SET domain 821 1066 IPR046341 -
Vra10g0130 1066 CDD SET_SETD1-like 911 1062 - -
Vra10g0130 1066 ProSiteProfiles Extended PHD (ePHD) domain profile. 686 801 IPR034732 -
Vra10g0130 1066 Gene3D - 243 350 - -
Vra10g0130 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 803 IPR013083 -
Vra10g0130 1066 SUPERFAMILY FYVE/PHD zinc finger 633 697 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0130 Vra-Chr10 3803338 3815129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0130 635 800 C2H2 Transcription Factor Family AT3G14740 32.948 5.79e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra10g0130 zf-HC5HC2H_2 2.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0130 - - gmx:100811337 2006.88