Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0129 ATGTATGCTGAAACTGGCCTTCTCTTCCCATATTTGCACAACCTCTCTCAAGAGCTTCACCAGCTTGAGGAGTACTGCAAAACCCAGAAGTACAATGCTTCAATGGATGACTATGTTCAGTGTTCTGCCATGTCAGAGTATGATTTGGCAGCAGAGGGAGATCTGTTCAAAGCTCCTGAACCTATTATTGAAGAGCCAATCATGGACCTGGATCCCATGACAGCTGCCATCTCAATGATATCTTGTGGGGAAGATGTCTCCTCTCAGGGACTAAAATCCACTGATATTGATATTCTTCAAAATGATCAATTTCTGAGTGAGGTATTCTATGAATGCAAAAAGGACCTCTTAGAAAAGGCAGCAATAGAGTCACCACTCTCAGAGATTCTGGAAATCAAGGTTCCTCTTCTGAACATTGATGAAAACTCAATTCAAGAAAACAGGCCACTTCCTGACATGCAGTTAGGAAAGAGTGTCAGTTCAGGAAGTTTAAGCTCAATGGATTGGATTCGTGGAGTTGCAATGAAGCCTGCTTTCATTGATATCCCTGCAATGGATTTCAATGCAGTTTATGGCATGCGAAGATCATTTAGTGAAGGAGATATAAAGACTCTCGGTAACGGAAACATGAACATTGTCCAATCACCCCTTGAGAGGCCCTTTCTCATCAGCAACTGCACCAGTGAGGAACGCTTCCAAAAGCTCTCCAGGTACAGGAATAAGAGGACCAAGAGGAACTTTGGGAGGAAAATCAAGTATGCATGCAGGAAGGCTCTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCAAGAAGTGAAGAATGTGAGAGCAAGAGGGAATGA 846 0.4326 MYAETGLLFPYLHNLSQELHQLEEYCKTQKYNASMDDYVQCSAMSEYDLAAEGDLFKAPEPIIEEPIMDLDPMTAAISMISCGEDVSSQGLKSTDIDILQNDQFLSEVFYECKKDLLEKAAIESPLSEILEIKVPLLNIDENSIQENRPLPDMQLGKSVSSGSLSSMDWIRGVAMKPAFIDIPAMDFNAVYGMRRSFSEGDIKTLGNGNMNIVQSPLERPFLISNCTSEERFQKLSRYRNKRTKRNFGRKIKYACRKALADSQPRIRGRFARSEECESKRE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0129 281 PANTHER CCT MOTIF FAMILY PROTEIN 27 279 - -
Vra10g0129 281 ProSiteProfiles CCT domain profile. 231 273 IPR010402 GO:0005515
Vra10g0129 281 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 27 279 - -
Vra10g0129 281 Pfam CCT motif 231 273 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0129 Vra-Chr10 3769346 3774013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0129 227 278 C2C2-CO-like Transcription Factor Family AT5G57660 50.000 2.29e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra10g0129 CCT 3.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0129 - - gmx:100814332 498.819