Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0125 ATGGAATCATGTGTCTCACCTGGGTTTCGGTTCCACCCAACAGATGAAAAGCTTGTTGGTTACTGTCTGAGGAAGAAGGTGGCATCTCAAAAGATTGACCTTGACGTTATCACAGAGATCGATCTATATCATAGATGCAGAATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCATAAAGATAAAAAGTATCCAACAGGGGCAAGAACTAACAGAGCTACCATGGTGGGATTTTGGAAGGCTACAGGAAGAGACAAAGCAGTGTATGACAAGGCAAAACTTATTGGGATGAGAAAATGGACAAAAGTCTGA 318 0.4214 MESCVSPGFRFHPTDEKLVGYCLRKKVASQKIDLDVITEIDLYHRCRIGYEEQNEWYFFSHKDKKYPTGARTNRATMVGFWKATGRDKAVYDKAKLIGMRKWTKV* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0125 105 Gene3D NAC domain 14 104 IPR036093 GO:0003677|GO:0006355
Vra10g0125 105 Pfam No apical meristem (NAM) protein 7 101 IPR003441 GO:0003677|GO:0006355
Vra10g0125 105 ProSiteProfiles NAC domain profile. 5 105 IPR003441 GO:0003677|GO:0006355
Vra10g0125 105 SUPERFAMILY NAC domain 4 102 IPR036093 GO:0003677|GO:0006355
Vra10g0125 105 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 101 - -
Vra10g0125 105 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0125 Vra-Chr10 3694590 3695144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0125 1 101 NAC Transcription Factor Family AT2G18060 81.818 9.69e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra10g0125 NAM 8.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0125 - - vra:106774689 226.483