Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0123 ATGGACTACGGAAGACTTGGACCCTCTCAGCCCATCAATCCAAGATCTTTCGCTAAGAAGAAGATTGCCTTCTTGTCACTCTTTGGAGTCATATTAATCGCTGCATCGGCGGTTACGGCCTTTGCGCTACTCTCTCGAACCGCTACAAGACCGGATACTTCAAGGCTTCGTCGAAAGCCTACACAGGCCATTTCACGCACGTGCAGCAAAACACGATTTCAGACAGTGTGCGTCAATTCGCTGCTGGACTTTCCCGGATCCCAGGCGGCTTCCGAGAAGGACCTGCTTCACATTTCCTTCAACGTCACGCTGCAGCACTTCTCCAAGGCGCTCTACACTTCCGCCGCAATTTCCTACTCCACCATGGATCCACGCGTCCGCGCCGCTTACGACGACTGCCTCGAACTCCTCGACGATTCCGTCGACGCGCTTGCGCGCTCACTCAGCACCGTCTCCCTCGGTGCCGTTGGCTCCGCCAACGAAGACGTCCTCACCTGGCTCAGCGCCGCACTCACTAACCAGGACACCTGCGCGGAGGGCTTTGCCGACGCCGCCGGTCCAGTGAAGGACCAGATGACCAACAACCTAAAGGACTTGTCCGAGCTCGTCAGCAATTGCCTCGCCATTTTCTCGGCAGCTTCCAACGGCGACGACTTCTCCGGCGTTCCCATTCAGAACAGGAGACGGTTGATGACAATGCGAGCCGATAATTTCCCGAGATGGTTGAATCGACGAGATAGGAGATTGCTGAACTTGCCTCTGTCGGCGATACAAGCCGATGTTGTGGTTTCCAAGGACGGTAACGGAACCGTTAAGACCATCACCGAAGCCATTAAGAAGGTCCCGGAATACAGTTCACGCCGCTTCATTATCTACGTCAGGGCAGGAAGGTATGAAGAGGATAATTTAAAGGTGGGGAGGAAGAAAACAAATGTGATGTTCGTAGGGGACGGTAAGGGCAAAACCGTCATCACAGGAGGGAAAAATTATTATAACAACCTCACCACATTTCACACGGCATCCTTCGCTGCCAGTGGTTCTGGTTTCATCGCCAAGGACATCACATTCGAGAACTACGCCGGACCAGAGAAGCACCAAGCTGTGGCTCTCCGTATCGGAGCGGATCACGCGGTGGTGTACCGCTGCAACGTCATCGGATACCAGGACACTATGTATGTCCATTCCAACCGTCAATTTTTCCGCGAATGCGACATTTACGGAACCGTCGACTTCATATTCGGCAATGCTGCCGTGGTGTTCCAGAACTGCAGTCTCTGGGCCCGCAAGCCAATGGCCCAACAGAAGAACACCATCACGGCCCAGAATCGCAAAGACCCGAATCAGAACACGGGCATTTCCATCCACAACTGTCGGATCCTTGCCACATCGGATCTAGAAGCATCCAAGGGTAGCTATTCTACTTATCTAGGTCGTCCATGGAAACTTTATGCTAGAACCGTGTACATGATGTCCTACATAGGGGATCACGTGCACCCACGTGGATGGCTGGAGTGGAACACGTCCTCGTTTGCTTTAGACACGTTATACTATGGTGAATACATGAATTCTGGGCCGGGTGCGGCCTTGGGGCAACGCGTGAAATGGGTCGGATATCGGGCCATCAATTCCTCCGCTGAAGCTTCTAAATTCACGGTAGGGCAATTCATATTAGGGTCATCGTGGTTGCCGTCTACCGGAGTTTCATTCGTAGCTGGGTTATCAACTTGA 1728 0.5301 MDYGRLGPSQPINPRSFAKKKIAFLSLFGVILIAASAVTAFALLSRTATRPDTSRLRRKPTQAISRTCSKTRFQTVCVNSLLDFPGSQAASEKDLLHISFNVTLQHFSKALYTSAAISYSTMDPRVRAAYDDCLELLDDSVDALARSLSTVSLGAVGSANEDVLTWLSAALTNQDTCAEGFADAAGPVKDQMTNNLKDLSELVSNCLAIFSAASNGDDFSGVPIQNRRRLMTMRADNFPRWLNRRDRRLLNLPLSAIQADVVVSKDGNGTVKTITEAIKKVPEYSSRRFIIYVRAGRYEEDNLKVGRKKTNVMFVGDGKGKTVITGGKNYYNNLTTFHTASFAASGSGFIAKDITFENYAGPEKHQAVALRIGADHAVVYRCNVIGYQDTMYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSLWARKPMAQQKNTITAQNRKDPNQNTGISIHNCRILATSDLEASKGSYSTYLGRPWKLYARTVYMMSYIGDHVHPRGWLEWNTSSFALDTLYYGEYMNSGPGAALGQRVKWVGYRAINSSAEASKFTVGQFILGSSWLPSTGVSFVAGLST* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0123 575 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Vra10g0123 575 CDD PMEI-like_3 68 215 - -
Vra10g0123 575 Pfam Pectinesterase 260 558 IPR000070 GO:0030599|GO:0042545
Vra10g0123 575 Gene3D - 254 573 IPR012334 -
Vra10g0123 575 PANTHER PECTINESTERASE 16 573 - -
Vra10g0123 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 39 211 IPR006501 GO:0004857
Vra10g0123 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 213 IPR035513 -
Vra10g0123 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 212 IPR035513 -
Vra10g0123 575 SMART PMEI_2 59 209 IPR006501 GO:0004857
Vra10g0123 575 PANTHER PECTINESTERASE 16 573 - -
Vra10g0123 575 Pfam Plant invertase/pectin methylesterase inhibitor 63 209 IPR006501 GO:0004857
Vra10g0123 575 SUPERFAMILY Pectin lyase-like 255 572 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0123 Vra-Chr10 3591073 3595355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0123 1 574 Carbohydrate Esterase AT3G49220 66.722 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0123 - - gmx:100808236 964.14