Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra10g0118 | ATGGACTTGGAAAGCGTTGAGTGTGTGTCATCCTTGGATGGCATGGATGAGGATGAGATCCACACCAATCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACCAATAACGTTAATTCTGTGGGGTCCACCGCCCTTGCTCCGGCAACCAGCGTCCATGAGTTACTGGAATGTCCTGTGTGTACTAATTCAATGTACCCTCCAATTCACCAGTGTCACAATGGCCACACACTCTGTTCCACTTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTTTGGCACTGGAAAAGGTGGCTGAATCACTTGAGCTACCTTGCAAGTACTACTCCCTTGGATGTTCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTATAGACCATATACTTGCCCTTATGCTGGATCAGAGTGTTCTGTCGTGGGAGATATTCCCTTCCTTGTTGCTCATTTAAGGGATGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCACGTGAAGTGGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTTTACATGGCATTTCTTCGTTTTATGGGTGATGAGAATGATGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGAAAACTCATCTGGGAGGGAACACCACGGAGTGTTCGAGATAGCCACCGTAAAGTGAGGGATAGCCATGATGGGCTCATCATTCAAAGAAATATGGCTCTATTTTTCTCTGGTGGGGATAGAAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAGCAACAGAATTCTGATGCTGGTGTGTGCATGCCAAATCTCTGTAGTTGA | 975 | 0.4523 | MDLESVECVSSLDGMDEDEIHTNHHHSEFSSTKPRNGGTNNVNSVGSTALAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHETVCNYRPYTCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS* | 325 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra10g0118 | 324 | CDD | RING-HC_SIAHs | 60 | 98 | - | - | |
| Vra10g0118 | 324 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 315 | - | - | |
| Vra10g0118 | 324 | SUPERFAMILY | RING/U-box | 53 | 101 | - | - | |
| Vra10g0118 | 324 | SUPERFAMILY | TRAF domain-like | 115 | 307 | - | - | |
| Vra10g0118 | 324 | MobiDBLite | consensus disorder prediction | 23 | 44 | - | - | |
| Vra10g0118 | 324 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 315 | - | - | |
| Vra10g0118 | 324 | CDD | Sina | 176 | 304 | - | - | |
| Vra10g0118 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 168 | IPR013083 | - | |
| Vra10g0118 | 324 | ProSiteProfiles | Zinc finger RING-type profile. | 62 | 98 | IPR001841 | - | |
| Vra10g0118 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 104 | IPR013083 | - | |
| Vra10g0118 | 324 | ProSiteProfiles | Zinc finger SIAH-type profile. | 115 | 175 | IPR013010 | GO:0008270 | |
| Vra10g0118 | 324 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 169 | 303 | IPR008974 | GO:0005515 | |
| Vra10g0118 | 324 | Pfam | Seven in absentia protein family | 104 | 303 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra10g0118 | Vra-Chr10 | 3486635 | 3490530 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra10g0118 | 30 | 310 | C3H Transcription Factor Family | AT2G41980 | 75.089 | 6.53e-164 | 457 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra10g0118 | K04506 | - | gmx:100810573 | 656.366 |