Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0115 ATGGGGAAGAAAGGAGCCAGCTGGTTTTCCTCCGTCAAAAAAGTTTTCAAATCCTCTTCTAATAAGGACTCGCCGGTGCCGGAGAAGAAGAAAGACAACAAGAAGGAAGAGCAATGGCAGCTGCATGAGGCCCCAGAGGAGGTGTCCTTGGAGCATTTTCCTGCTGAGAGTTCTCCTGATATTACCAATGAAGGGAGTGCCACGTCAACACCGGTGACTGAAGATAGAAGCCATGCTATGGCCTTTGCAGCAGCAACTGCTGCCGCTGCCGAAGCCGCAGTAGCAGCTGCTCAAGCGGCCGCTAGAGTTGTGAGATTGGCAGGTTATGGACGCCAATCCACGGAAGAAAGAGCTGCAATACTCATTCAATCATACTACAGAGGTTACCTAGCTCGACGTGCTTTGCGTGCTTTGAAGGGATTGGTGAGACTGCAAGCGCTTGTGAGGGGACACAATGTAAGAAAGCAAGCGCAGATGACGATGCGATGCATGCATGCATTAGTCCGAGTACAGGCAAGAGTAAGAGCTCGAAGACTCCAGCTGACTCAAGAGAAGTTTCAGAGAAGAGTTGAGGAACAGGTCCAAAGAGGACTAGAGGAACAAGAACAACCTAAGCTACTTTTGAGCCCCATCAAAATGTTAGACATGGATACATGGGACAACAGGCGCCAAAGTAGCCAACAGATTAAGGAGAATAATTTCAGGAAACATGAAGCTGCAATGAAGAGGGAGAGAGCTCTTGCTTACGCTTTCAACTGTCAGCAGAAGCAAAATCCAAATGATGATGATGTTGGAAGCTATAGCAATGAGCGTGAAAGAGCCGAAATGGATTGGAACTGGTTGGAACGGTGGATGTTATCACAATCACAGAACTCAAGGCACTTTGGGTCACGGGAGAACCTTTATAGAACTCTTGCTACTGCAACTTCCACCACTGATGACATGTCTGAAGAAAAAACAGTTGAAATTGACATGGCTGCAACTCTGGATTCAGCTCATGCTAACATGGGTCTCATCCACCAAGAATCTTTTGACACAAGCCCAATATCCAATAGGTACCACCAGCGCCACCACAGTGCAGGTGTACCAAGCTACATGGCCCCAACTCAGTCTGCAAAGGCCAAGGCTCGTAACCAAGGCCTGTTTAAGAATAGGGGTTCACCTGGGCCTAACTGGAACTCCTCCACCAGGAGAAGTTCCGTTCTAGGGCTGGGCTGTGACTCAACTAGCTCTGGTGGGCCCACTGCAGCTCATGGGTTCCCAAGAAGTCCAAGCCCAAAAATTAATGAAATTCGCCTCCAATCAAGACGAATTTCAGGTAGCAGCCCGGATAATGTTCACATTGAGGATTGGGCTCTTCCCCTTGGAACCAGTGGTTGGACTTGA 1386 0.4863 MGKKGASWFSSVKKVFKSSSNKDSPVPEKKKDNKKEEQWQLHEAPEEVSLEHFPAESSPDITNEGSATSTPVTEDRSHAMAFAAATAAAAEAAVAAAQAAARVVRLAGYGRQSTEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMHALVRVQARVRARRLQLTQEKFQRRVEEQVQRGLEEQEQPKLLLSPIKMLDMDTWDNRRQSSQQIKENNFRKHEAAMKRERALAYAFNCQQKQNPNDDDVGSYSNERERAEMDWNWLERWMLSQSQNSRHFGSRENLYRTLATATSTTDDMSEEKTVEIDMAATLDSAHANMGLIHQESFDTSPISNRYHQRHHSAGVPSYMAPTQSAKAKARNQGLFKNRGSPGPNWNSSTRRSSVLGLGCDSTSSGGPTAAHGFPRSPSPKINEIRLQSRRISGSSPDNVHIEDWALPLGTSGWT* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0115 461 MobiDBLite consensus disorder prediction 384 416 - -
Vra10g0115 461 Pfam Protein of unknown function (DUF4005) 347 401 IPR025064 -
Vra10g0115 461 SMART iq_5 137 158 IPR000048 GO:0005515
Vra10g0115 461 SMART iq_5 114 136 IPR000048 GO:0005515
Vra10g0115 461 Pfam IQ calmodulin-binding motif 142 157 IPR000048 GO:0005515
Vra10g0115 461 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Vra10g0115 461 MobiDBLite consensus disorder prediction 381 429 - -
Vra10g0115 461 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vra10g0115 461 PANTHER IQ-DOMAIN 21 1 441 - -
Vra10g0115 461 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Vra10g0115 461 MobiDBLite consensus disorder prediction 1 73 - -
Vra10g0115 461 Gene3D - 116 157 - -
Vra10g0115 461 MobiDBLite consensus disorder prediction 59 73 - -
Vra10g0115 461 PANTHER IQ-DOMAIN 5-RELATED 1 441 - -
Vra10g0115 461 MobiDBLite consensus disorder prediction 23 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0115 Vra-Chr10 3430529 3434281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0115 1 432 IQD Protein Family AT3G49260 49.892 1.47e-96 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0115 - - gmx:100808965 682.559