Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0111 ATGAAGAAATCAGTGACTGATTTTGTGGCGGCATACTTGGTTTGCCTGCAGCACAAGTACCTAGCATTATCACCTCAAGGCTTGATACAACCATTACCCATTCCTCAAGCAATATGGGAGGAAGTCAACATGGACTTTATTGTGAGGTTACCCAAATCTCATGGCTATGACGCAATATTGGTAGTGGTAGATCGCCTGAGAAAATGTGGGCATTTCATATCCATCAAACATCCTTACACAGTCAAGTCCATAGCAGAGGTTTTTTTAAGGGAAATTGTTAGGCTTCATGGGGCTTTGAACAAGTCTAGAATTCACAAGCCAAAGCAACCATATGTCAGGTTAGCTGAAACTTGCATAGATGAGAGGGAACCAGAAAATGTCACAGAAGCACTCACAAGGCCACAATGGAAAAAAGCTATGGACAATGAGTATGAGTTATGTGATTTTGGATCTGCCAGAGAGTTACAAAATATATCAACTTATTCTTCCTCGGTACCACTGGCAAAACGCGGAACACCCTGTTACATGGCTCCGAAACTTTTTGATGATGATGGAATTCATTCCTATCAATCAGACTTATGGGCCCTAGGATGTGTGTTATACAAATGTTGGGCAAGAAGACCACCTTTTCTGGTACGAGAATACAGTAACACAAAGTCCATCCTTTCAGATCCTATTCCACCTCTTCCTGGTCATCCAAGTCCACACTTTGTTAATTTGATCAATTCTCTGTTGGTAAAGAATCCAGTAGAAAGAATACAGTGGCCTGAGCTCTGTGAACATGCATTTTGGAAAACAAAAATTCCTCCTGTCACTCTGCCTGCTAATCTTGCATTTAATGATATGATAGAGAAATACAATAGAATCTTTCCACCATTCATGGAACTTGCTAATGAGAATATAGAAGAAGAAGAACCATTCATGGATTGTAATNAGAAGAAGAAGAACCATTCATGGATTGTAATGAGAATATGGAAGAAGAAGAACCATTCATGGATTGTAATGAGAATATGGAAGAAGAAGAAGCACATATTGTTTCAATACCATCCCAACATCAGAGGCAGAATCAGAATAATGAAGAGTTGTTGA 1089 0.3939 MKKSVTDFVAAYLVCLQHKYLALSPQGLIQPLPIPQAIWEEVNMDFIVRLPKSHGYDAILVVVDRLRKCGHFISIKHPYTVKSIAEVFLREIVRLHGALNKSRIHKPKQPYVRLAETCIDEREPENVTEALTRPQWKKAMDNEYELCDFGSARELQNISTYSSSVPLAKRGTPCYMAPKLFDDDGIHSYQSDLWALGCVLYKCWARRPPFLVREYSNTKSILSDPIPPLPGHPSPHFVNLINSLLVKNPVERIQWPELCEHAFWKTKIPPVTLPANLAFNDMIEKYNRIFPPFMELANENIEEEEPFMDCNXKKKNHSWIVMRIWKKKNHSWIVMRIWKKKKHILFQYHPNIRGRIRIMKSC* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0111 362 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
Vra10g0111 362 SUPERFAMILY Protein kinase-like (PK-like) 141 285 IPR011009 -
Vra10g0111 362 Pfam Protein kinase domain 142 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0111 362 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0111 362 SMART serkin_6 60 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0111 362 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 145 295 IPR044591 GO:0000911|GO:0000914|GO:0008017
Vra10g0111 362 SUPERFAMILY Ribonuclease H-like 31 99 IPR012337 -
Vra10g0111 362 Gene3D - 29 108 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0111 Vra-Chr10 3378361 3381186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0111 141 263 MAP Kinase Kinase Kinase AT5G67080 30.469 5.26e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Vra10g0111 Pkinase 8.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0111 K17545 - vra:106774687 725.317