Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0108 ATGTTTCAGTCCACACTGTCCGGCATATCCCGGCGGCAGCGCCGCCCATTTTCCTCCGCCGTCTCCGCCGCCATCGCCGCCAACAGCGTTCCTGCCTCGCCGCTCCCTCCCTCATCCTTCACCATCCGGCCCCCAGTCCACCCTTGGCCTCGCCGCCTCACTCCTCTCAACCTCGCCTCCCTCATCTCCCGCCAGCACGACCCCGACCTCTCTCTCCAAATCTTCTACCACGCCCAATCCCTCCACCCCTCCCTCTCTCACACGCCGCAACCCCTCCACGCGCTTTTCCTTAAACTCTCACGCTCCCGTCGCTTCTCCATCCTCGAGTCCCTCCTCACGCGCCTCCCCAATCCGCTGCCAGAACCCTCACTTGTCATCCTCATCCGCGCGTACGGCCTCGCCGGAAAACCTCTATCTGCCGTCCGCCTCTTCCTCAAACTCCAACCCCTCCGCGTCCGAACCTCCGTCAAATCCCTCAACGCGCTCCTGAACGCACTGGTTCAGAACAAACGGTACAGTTTAGCGCATTCAGTGTTTAAAAGCTCTGCAGAAAAATTTGGGGTTGTGCCTGACGTTGTTAGCTGCAACATTTTGCTCAAGGCTCTGTGTAAGAGCAATGAAGTTGATGTTGCGGTTAGGGTTTTGGATGAGATGGGTTTGATGGGTTTGGTTCCCAATGTGGTTAGTTATACAACTGTGTTGGGTGGGTATGTGTTTAGGGGTGATATGGAGAGTGCTACGAAGGTTTTTGGGGAGATTTTGGATAGAGGGTGGGTGCCTGATGCAACCACTTACACTGTTTTGATGAGTGGATTTTGTAGGATGGGAATGTTTGTGGAGGCGATTAGGGTTATGGATTTGATGGAGGAGAATAGGGTTCAAGCTAATGAGGTTACTTATGGTGTCATGATTGAGGCTTATTGTAAGGGGAGGAAATCTGGGGAGGCTTTGAACTTGCTTGAGGATATGATGGCGAAGGGGTTTGTGCCAAATTCAGTGTTGTGTTGTAGAGTTGTTGATTTGTTGTGTGAGGAGGGGAGTGTGGAGAGGGCTTGGGAGATGTGTAGTGGGATGGTGAGGAAAGGGATTCAGGTTGGTGGCGCGGTGGTGAGTACGATTGTGCATTGGCTTTGCAAGGAGGGGAAGGTGGTGGAGGCAAGGGAAGTGTTGGAGGAACTGGAGAAGGGGGAGGTTGTGAGTTTGTTGACTTATAACACACTGATTGTGGGAATGTGTGAGAGAGGGGAGCTTTGTGAGGCAGCGAGGCTGTGGGATGACATGGTGGAAAAGGGTAGAGCTCCAAATGCATTTACTTACAATGTGTTGATTAAAGGGTTTTGTAAGGTTGGGAATGTGAAGGAGGGTATCAGAGTGCTGGAGGAGATGGTGGAGAGTGGATGCTTGCCTAACAAATCAACATACTCCATATTGGTTGATGGGATTTCTGTTTCAGGAGGAAAGAAAGAGGAAATCGAGAAGGTAGTTTTGTTGGCCATGACGTCTGGAGTTGATGGTGACTTGTGGGAACTTTTCTTAAAAGTTGTGGTCAATTTAGATGGCAATGCAGCTAAACTGGATAGGATATTGACAGAGAATGCAGTGTGA 1605 0.514 MFQSTLSGISRRQRRPFSSAVSAAIAANSVPASPLPPSSFTIRPPVHPWPRRLTPLNLASLISRQHDPDLSLQIFYHAQSLHPSLSHTPQPLHALFLKLSRSRRFSILESLLTRLPNPLPEPSLVILIRAYGLAGKPLSAVRLFLKLQPLRVRTSVKSLNALLNALVQNKRYSLAHSVFKSSAEKFGVVPDVVSCNILLKALCKSNEVDVAVRVLDEMGLMGLVPNVVSYTTVLGGYVFRGDMESATKVFGEILDRGWVPDATTYTVLMSGFCRMGMFVEAIRVMDLMEENRVQANEVTYGVMIEAYCKGRKSGEALNLLEDMMAKGFVPNSVLCCRVVDLLCEEGSVERAWEMCSGMVRKGIQVGGAVVSTIVHWLCKEGKVVEAREVLEELEKGEVVSLLTYNTLIVGMCERGELCEAARLWDDMVEKGRAPNAFTYNVLIKGFCKVGNVKEGIRVLEEMVESGCLPNKSTYSILVDGISVSGGKKEEIEKVVLLAMTSGVDGDLWELFLKVVVNLDGNAAKLDRILTENAV* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0108 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 190 IPR002885 -
Vra10g0108 534 Pfam PPR repeat 187 218 IPR002885 -
Vra10g0108 534 Gene3D Tetratricopeptide repeat domain 278 397 IPR011990 GO:0005515
Vra10g0108 534 Gene3D Tetratricopeptide repeat domain 398 516 IPR011990 GO:0005515
Vra10g0108 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Vra10g0108 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vra10g0108 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vra10g0108 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vra10g0108 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Vra10g0108 534 Gene3D Tetratricopeptide repeat domain 151 277 IPR011990 GO:0005515
Vra10g0108 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vra10g0108 534 Pfam PPR repeat family 225 274 IPR002885 -
Vra10g0108 534 Pfam PPR repeat family 402 448 IPR002885 -
Vra10g0108 534 TIGRFAM PPR: pentatricopeptide repeat domain 335 364 IPR002885 -
Vra10g0108 534 TIGRFAM PPR: pentatricopeptide repeat domain 437 470 IPR002885 -
Vra10g0108 534 TIGRFAM PPR: pentatricopeptide repeat domain 298 332 IPR002885 -
Vra10g0108 534 TIGRFAM PPR: pentatricopeptide repeat domain 264 296 IPR002885 -
Vra10g0108 534 TIGRFAM PPR: pentatricopeptide repeat domain 371 395 IPR002885 -
Vra10g0108 534 TIGRFAM PPR: pentatricopeptide repeat domain 403 436 IPR002885 -
Vra10g0108 534 TIGRFAM PPR: pentatricopeptide repeat domain 228 262 IPR002885 -
Vra10g0108 534 TIGRFAM PPR: pentatricopeptide repeat domain 158 192 IPR002885 -
Vra10g0108 534 TIGRFAM PPR: pentatricopeptide repeat domain 193 227 IPR002885 -
Vra10g0108 534 Pfam PPR repeat 126 147 IPR002885 -
Vra10g0108 534 Pfam PPR repeat 158 180 IPR002885 -
Vra10g0108 534 Pfam PPR repeat 298 328 IPR002885 -
Vra10g0108 534 Pfam PPR repeat 371 395 IPR002885 -
Vra10g0108 534 Pfam PPR repeat 338 363 IPR002885 -
Vra10g0108 534 PANTHER OS06G0125300 PROTEIN 17 532 - -
Vra10g0108 534 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 17 532 - -
Vra10g0108 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0108 140 503 Glycosyltransferase AT1G05670 27.182 4.31e-43 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0108 - - gmx:100803526 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0940 6 10392531 10396347 Vra10g0108 10 3332031 3335670 PCT