Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0107 ATGTCCTCCGAAGACATCACCCTCGTCCCCGACCAGAGGATCGAGAACGGTCTCAGCTCCCCTCTTGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCACGCCGCAGCGTCGGGTCGGAGACCCGGGTCCTAAAACCCGTGAACTCGGCGCCTTCATCGACGAGAAGATGTTCATTGACCGCGACCGCTTCTTCGCCGCTCAGAACCCCGACTTCCGCCGCTACGCCGAGTGCTCCTCCCGCCAAGAGCCCCGCAATTGGACCGTCAACGGCACCGCCGCCACTCCCAGCGAGGACGACGANTCCGACGAGGANGACGAAGATGACGANGATGANGACGACGACGAAGGNGATACNGAAGTTGAAGGACTCGTCGGTGGTGGAAGCAAAAGGGAAATTATCGCTAATAACAACGGTGGCGGTGGTAATTTGCCTTCTGTTGCAAACGGGAAAGCTCACGCTTTTGTTTCTGGGAGAGACCTGTTGGGGAAGGATGGTGGAGATATTGGGCAGTTGGTGCTTAGCAATGTGAATGGTGGTGGTGATGAAGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCTGTCACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTACCTTCAAGGTGCTGATGGGGTTTCTGGCCACAAAGTTATGGTGGATGATGGTGGTTGTGGGTTTAGTGGGAGAAAGGATGCAATGTATTCTACCGAGTCAGGGGAATCACTCAGGAATATTCTTTCAGATCCTGTTACTGGAGCTCTTATGGATGACGCGATGATATTACCGTGTGGACATTCATTTAGCGGAAGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACCTGTTCTCAACCCACAACCGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATATCGTCGAGAAGAGGAGTCTCAATTCTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGATTTGGAGACTCATCTGTTATGGAACCATCAAGGAATAGAGGTGTTCAGTTTCCGTATGCTGTTATGGACCGGGTTGTCATAAAGGGAAACAAAAGGATACCACAACGCTTTGTTGGGCGTGAAGCGATTGTAACAACGCAATGCCTGAATGGATGGTATGTAGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCACTCGCGAAGGTTTTGGATGATCCTTCAAAGCCTTCCTCCAGCAAGATGTCACCTAATTGGCTTTAG 1284 0.5023 MSSEDITLVPDQRIENGLSSPLVFQDDPLRFNCPTPQRRVGDPGPKTRELGAFIDEKMFIDRDRFFAAQNPDFRRYAECSSRQEPRNWTVNGTAATPSEDDXSDEXDEDDXDXDDDEGDTEVEGLVGGGSKREIIANNNGGGGNLPSVANGKAHAFVSGRDLLGKDGGDIGQLVLSNVNGGGDEDHRQEGLGKSQNSVTVAETDCEEYYSHYLQGADGVSGHKVMVDDGGCGFSGRKDAMYSTESGESLRNILSDPVTGALMDDAMILPCGHSFSGSGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEESQFYRSPKRRRERFDQGGFGDSSVMEPSRNRGVQFPYAVMDRVVIKGNKRIPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPSSSKMSPNWL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0107 427 MobiDBLite consensus disorder prediction 100 122 - -
Vra10g0107 427 Pfam U-box domain 253 318 IPR003613 GO:0004842|GO:0016567
Vra10g0107 427 ProSiteProfiles U-box domain profile. 248 320 IPR003613 GO:0004842|GO:0016567
Vra10g0107 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 328 IPR013083 -
Vra10g0107 427 MobiDBLite consensus disorder prediction 27 48 - -
Vra10g0107 427 SUPERFAMILY RING/U-box 248 320 - -
Vra10g0107 427 MobiDBLite consensus disorder prediction 85 139 - -
Vra10g0107 427 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 56 427 - -
Vra10g0107 427 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 56 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0107 Vra-Chr10 3312507 3317773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0107 194 427 Plant U-box Gene Family AT5G05230 59.504 3.65e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0107 - - gmx:100786717 686.411