Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0105 ATGGAATTTGCTTCCGAACATGATTTCCCCAATTTTGAGATCATTCCTCATACCTTCGCCTCATGCTTTTTCTCTGCTCAACTATACCCCACAGACAAAGCGATGATGGATGTTTCACTTTCACCATTAGAGGGTTTTTCCGGTCACGATTGGACACAGCAGTTGCCGTATTCAAGTAAGCAACTTTGCTTGAATGAGTTTCCAGATTTGGAAAACCTGGACCTCGATTTTAGCCTCCCACCCCTGGGTGAAGATTTGGAGGAGGTGGAGCAGAAGCCCTTGAACATTATTGTTGTTCCCGAAGAGGGTCATTGCGGTCGCGAGAAGGGTTTTGGGGATGCTTTATTGGCGATTGAAAATGGGTCTGCGATTTGTGTGAAGAAAGAGGAGGTGCAGAATATCGAGCAGATGGCAGTGCCTAGTGGTAGTAGTGGCAGTAAGAAGAAGAAGAAGCCATGTGCTTTGGAATTTGAGGAGATAAAGAAGCATTTTGATGTTCCCATTAATGAAGCTGCGAAGCAAATGAATGTGGGGCTAACCATGTTGAAGAGAAGGTGCAGGGAGCTTAACATCATGAGGTGGCCCCATAGGAAACTCAAGAGCTTGCAATTACTCATCGAGAATGTTAAGGAATTGGGTTTGGCAGACGAGGTTCCCATGTTGGAGAAGCATAAAAGGTTGTTGGAAAAATTACCAGGACTGGAATTATGTGCAAAAGCCAAGAAGCTGAGGCAAGCTTGTTTCAAAGCTAATTACAAGAGGAGAAGGTTTATGGGTATGACACTCCAAGCTTGA 795 0.4465 MEFASEHDFPNFEIIPHTFASCFFSAQLYPTDKAMMDVSLSPLEGFSGHDWTQQLPYSSKQLCLNEFPDLENLDLDFSLPPLGEDLEEVEQKPLNIIVVPEEGHCGREKGFGDALLAIENGSAICVKKEEVQNIEQMAVPSGSSGSKKKKKPCALEFEEIKKHFDVPINEAAKQMNVGLTMLKRRCRELNIMRWPHRKLKSLQLLIENVKELGLADEVPMLEKHKRLLEKLPGLELCAKAKKLRQACFKANYKRRRFMGMTLQA* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0105 264 PANTHER PROTEIN RKD4 141 256 IPR044607 GO:0003700
Vra10g0105 264 Pfam RWP-RK domain 155 202 IPR003035 -
Vra10g0105 264 PANTHER PROTEIN RKD4 141 256 - -
Vra10g0105 264 ProSiteProfiles RWP-RK domain profile. 141 224 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0105 Vra-Chr10 3235750 3237484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0105 155 259 AtRKD Transcription Factor Family AT5G53040 62.857 7.10e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vra10g0105 RWP-RK 6.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0105 - - pvu:PHAVU_009G051600g 465.307