Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0099 ATGGCCCTCTCAACTCCACACATGCAAACATTCCTCTCCTGCAAGATCCATAGTCGCTCCACCTCTAAGACCACCCAGAGAAATACTTTCAGCACCTCCAGCAGGGGCCGCTGCTGCTCTGCCATAGCCATTGATGCTCCGTCTTCTTTAACTGAGGTGCCCGGTGTACGATGGGGGTCCATAGCCTTGCAAGGTCTCCGCGAAGAGATGGAGGATGACATCATTGTTCGACCCGATGGCCTTCAGGGCTTCTCTTTCGCCGCTGTCTTCGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGATTACTATTAGTGAAGAAAGATTTCAAAGCCATTAAAGAAGCATTGCAGGAGGCATTTCTCAAGGCAGACACGAGGTTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCCACAGCAACTGCCATTTTCGTCGGAGATGATGAGCTTCTAATTTCACATATCGGTGATTCTTCTGCGGTTCTATGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCATATGGGAGCAAAAAAACTTCTCTTGATGAAATTAGAAGAATAAGAGAAGCAGGTGGATGGATTAGCAACGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACTTGCGATTCAAAACCAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAAATGGTCAGCAAAGTTCATCTCTCGTGTACAGCTCAACAATGACTTGGTTGTAGCGTACCCTGATATTTATCAGGTAGCTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCAACCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTTAGGGATCAACTACGAAAACATGGAAACATTCAGCTAGCATGTGAATCGCTTGCAGAAGCCGCTTTGGACCGACGTACACAGGATAATGTCAGCATTATAATTGCAGATTTAGGGAGGACAGACTGGCAGAATGTGCCACTGGAGCAAAAAAATACTATAGTTGAGCTGGTTCAAGCTCTTGCTACCATTGGAATTGTGTCTTTTGGAATCTGGTTTTCATCACAGTTTTCTTTATAG 1161 0.4539 MALSTPHMQTFLSCKIHSRSTSKTTQRNTFSTSSRGRCCSAIAIDAPSSLTEVPGVRWGSIALQGLREEMEDDIIVRPDGLQGFSFAAVFDGHGGFSSVEFLRDELYKECVEALQGGLLLVKKDFKAIKEALQEAFLKADTRLLKRLEMNGEEDESGATATAIFVGDDELLISHIGDSSAVLCRSGKAEVLTSPHRPYGSKKTSLDEIRRIREAGGWISNGRICGDIAVSRAFGDLRFKTKKNEMLQKGVQEGKWSAKFISRVQLNNDLVVAYPDIYQVALGSDAEFVVLATDGLWDYMSSSEAVSLVRDQLRKHGNIQLACESLAEAALDRRTQDNVSIIIADLGRTDWQNVPLEQKNTIVELVQALATIGIVSFGIWFSSQFSL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0099 386 Gene3D - 56 352 IPR036457 -
Vra10g0099 386 CDD PP2Cc 64 345 IPR001932 -
Vra10g0099 386 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Vra10g0099 386 SUPERFAMILY PP2C-like 49 346 IPR036457 -
Vra10g0099 386 PANTHER PROTEIN PHOSPHATASE 2C 57 10 382 - -
Vra10g0099 386 Pfam Protein phosphatase 2C 59 338 IPR001932 -
Vra10g0099 386 SMART PP2C_4 47 343 IPR001932 -
Vra10g0099 386 PANTHER PROTEIN PHOSPHATASE 2C 10 382 IPR015655 GO:0004722|GO:0006470
Vra10g0099 386 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0099 Vra-Chr10 3144694 3148947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0099 1 322 PP2C-type Phosphatase Gene Family AT4G27800 61.846 1.69e-142 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0099 K04457 - vra:106776113 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0099 10 3144694 3148947 Vra6g1906 6 35664779 35667137 PCT