Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0094 ATGGGTAGCTTCAGCGAAGACGATGAATGTCGGTTTTTCGATGCTCAAGAGGATGTTTTGTCTATAGCGGATGATGAAGGGGTATCCAATGGTTTCGATTATGGATTGTGGATTCAGAGTCCAAGGAGTGTTAGAGAGCGTAAGGGCAGGTTTATGAAGAGTATGGGACTGAGTAGCGTGGATTTGACTGTCCTAGAAAGTGAAAATTCAGTAGATGTGGGTAGTGTTCTGTGTGAAGAGGGAAAGGATAGAGTTGAATTTACTAGTGGGGCTGTGACCCGAAATTGTGTTGTGGAAGAAGAATTCTGTTCAAGCCGGACATCAATGTCTTGTTTGCATAGGGAGGATTCTTCAGAGGAGCTTGGTTTAGTGGATAACTCGCCGTGTGGAAGTGAGAATTTGGAGGGTAATGTGGATCAAGAGGGGCTGGAGAGTAGGGAGATGAGTGATGAAAGAGATCTGGATTCAGATCGATTGGTTGTTATGGCAGAGCCTAAGGATTCAGAGAATGGCTTTAGGGAAACGGATGCCAATGCTTCTGCTCGGAGGACAAAGGGTTGGTTCAGGAAATTGCGGTCAATATCATGCATGGTTACTAGTCATGGGGAAGGTGATTTTGGAAGAGGAGAAGGCCTTGATGAAATGCCAGGGTGTAGGCTACCGAAAGTTAAGGTCCGTCAGTCAAAGAAGCCAATGAAGGAACTTTCAGCTCTTTACATGAGGCAAGATATCAAAGCTCATGAAGGTTCAATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCAAGTGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAGTTGATATTCCAGAAATTGATCCATCTTGCATTTATTTCACTGTGAATAATCTCTCTGAATTGACACCACTATTTATTGATAAAGAAAAGATAAACAAACTGAAGAGCCTGAAAAAAACATCAGATTCTGCTTGTGTAGTTTTTCCTCCTAAGATCTTCCGGTTGTTGGAGAAACCATTGCATGAATTTCGTGGGCATAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGACTATGGCAAGTGAATAACGACCGTTGCTTGAAGGTTTTCTCACACAGTAATTATGTGACCTGCATACAATTCAATCCTGTGGATGATAACTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGGCAATTTCTGATTGTCACGTTGTTGATTGGATTAGTATCAAAGATATAGTGACTGCAGTATGTTATCGGCCTGATGGGCAGGGAGGGATCATTGGCTCCTTGGCTGGCAATTGTCGATTTTACAATGTATCAGAGAATCGCTTGCAGTTAGATTCCCAACTATGCTTAATTGGTAAAAAGAAGCTTCTTGGCAGAGGGATTACTGGGTTTCGGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCCTGTGCTGATTCACAAGTCAGAATCCTTGACGGCCTTAATGTGATTGGCAAGTATAAAAGCCTTAGCACAGGGAGCCCGATATGTGCATCGTTTACTTCTGATGGGAAACATATTCTATCAGCATGTGAGGACTCTAACGTATACCTATGGAATGTTAATGAGGAAGAGTCATCTAATCCTGTGAAAGCTAAGAAGATTACGTCTTGTGAGCGGTTTTGTTCAAATGCATCTGTAGCAGTACCTTGGCATGGTTTGAAATCTAAAAGTATTGAAAATAAACATCAGTTGAACTTGTTGGATAAAGGATCATCTCAAGTTATTCAACTTAATCCACCTGCTTCCTTCTCTCTGAGCCAAGAGTTTGTTTTGGAGTCTTTTTCGAAGGGGTCTGCAACTTGGCCCGAGGAGAAGCTTCCTGTTTCAAGCTCAAAGGCGAAAACATCATTGATTCACCAATCCGAATACAATTTCTTGAAGTCTTCTTGCAAGAGTACCTCATCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTGGCTGGGATGGCAGGATAAAAGCATTCCACAATTATGGGCTACCTATACCCGTTTGA 2100 0.4233 MGSFSEDDECRFFDAQEDVLSIADDEGVSNGFDYGLWIQSPRSVRERKGRFMKSMGLSSVDLTVLESENSVDVGSVLCEEGKDRVEFTSGAVTRNCVVEEEFCSSRTSMSCLHREDSSEELGLVDNSPCGSENLEGNVDQEGLESREMSDERDLDSDRLVVMAEPKDSENGFRETDANASARRTKGWFRKLRSISCMVTSHGEGDFGRGEGLDEMPGCRLPKVKVRQSKKPMKELSALYMRQDIKAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFIDKEKINKLKSLKKTSDSACVVFPPKIFRLLEKPLHEFRGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNNDRCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWAISDCHVVDWISIKDIVTAVCYRPDGQGGIIGSLAGNCRFYNVSENRLQLDSQLCLIGKKKLLGRGITGFRFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPICASFTSDGKHILSACEDSNVYLWNVNEEESSNPVKAKKITSCERFCSNASVAVPWHGLKSKSIENKHQLNLLDKGSSQVIQLNPPASFSLSQEFVLESFSKGSATWPEEKLPVSSSKAKTSLIHQSEYNFLKSSCKSTSSAHAWGMVIVTAGWDGRIKAFHNYGLPIPV* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0094 699 PANTHER WD REPEAT DOMAIN 44 6 698 IPR040324 -
Vra10g0094 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 382 - -
Vra10g0094 699 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 698 - -
Vra10g0094 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
Vra10g0094 699 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vra10g0094 699 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Vra10g0094 699 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Vra10g0094 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 388 420 - -
Vra10g0094 699 SMART WD40_4 423 462 IPR001680 GO:0005515
Vra10g0094 699 SMART WD40_4 514 554 IPR001680 GO:0005515
Vra10g0094 699 SMART WD40_4 473 513 IPR001680 GO:0005515
Vra10g0094 699 SMART WD40_4 341 379 IPR001680 GO:0005515
Vra10g0094 699 SMART WD40_4 237 276 IPR001680 GO:0005515
Vra10g0094 699 SMART WD40_4 382 421 IPR001680 GO:0005515
Vra10g0094 699 SMART WD40_4 645 691 IPR001680 GO:0005515
Vra10g0094 699 Gene3D - 227 591 IPR015943 GO:0005515
Vra10g0094 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 277 IPR001680 GO:0005515
Vra10g0094 699 SUPERFAMILY WD40 repeat-like 239 689 IPR036322 GO:0005515
Vra10g0094 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 277 - -
Vra10g0094 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 533 563 IPR001680 GO:0005515
Vra10g0094 699 MobiDBLite consensus disorder prediction 124 154 - -
Vra10g0094 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 388 IPR001680 GO:0005515
Vra10g0094 699 Pfam WD domain, G-beta repeat 343 378 IPR001680 GO:0005515
Vra10g0094 699 Pfam WD domain, G-beta repeat 384 420 IPR001680 GO:0005515
Vra10g0094 699 Pfam WD domain, G-beta repeat 244 275 IPR001680 GO:0005515
Vra10g0094 699 Pfam WD domain, G-beta repeat 528 554 IPR001680 GO:0005515
Vra10g0094 699 MobiDBLite consensus disorder prediction 139 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0094 Vra-Chr10 3019603 3024494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0094 244 448 U-box Gene Family AT2G33340 24.464 2.74e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0094 - - gmx:100807177 1165.98