Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0087 ATGGAAAACGAGTTATTAACTCGTGCCTCACTTGCCCCAACATCGGAGTTACTTTCTCGGACCATACTTGCTGTTTTTGAAACTGTGAAAGCAGCCAATGAGGTTGTCATTCACAAGGAAAATTTTAAGAGATTCGCTATTCATTTGGAGAATGTTTCATTTATATTGAAGTCTTTGTCAAAGGAAGGCATACACAACGGCTGGAGCTTGCAAAAGGCTATGGCTGGTCTCAACCGAGAGGTTGAAGTTGCTAAGCAGCTTTCTGTTGAGTGCAACAGTAGAAGTAAGGTTTATCTTTTAATCAATTCAAGAAAGATTGTTACCCGCTTGAATTGTTGTACCAAGGATATAGGTCGTGCCATAACTCTTATCCCTTTGGCCTCTTTAAACATTAGCTCTGGTTTAAATCAACAGATAAGTGAATTGTGTCAAAAAATGTTAGATGCTGAGTATCAAACTGCTGCAATAGATGAGGAGATTTTGAAGAAAGTTGAGACAGCAATACAAGAGGGAAATGTTGATCGGTCCTATGCGACTCAGTTGCTAGCTGGCACTGCACGTGCCATTGGGGTCCCCGTGGAGCATGGTGCTTTGAAAAGAGAATTCGAAGATCTGAAAAATGAAATGGAAAATGCCAAGTCAAGGATGGACATGTCAGAAGCTCTACACATGGAGCAGATTATTGCAGTACTTGGAAAGGCAGATTTTATAACTTCAGCACAAGAGAAGGAAAGTAAGTATTTTGAGAAGAGAAATTCCTTGGGAGAGAGACCATTGAGAGCTCTGCATTCCTTTTACTGCCCAATCTCTCATGAAATCATGGTGGACCCTGTGGAGACTTCCTCTGGGAAGACATTTGAGAGAAGTGAAATAGAGAAATGGTTTGCTGAAGGGAACAATCTCTGTCCCTTGACCAGGTTGCCTCTGGATACTAGAATCCTGAGGCCAAATAAAACTCTTAAAATGTCTATTCAAGAATGGAAGGATAGAAACACTATGATTACCATTTCTACCATCAAATCCGAACTTGAAACGAATGATGAAGAGGAAGTGATTCGGTCCTTAGACAAATTACAGGACCTGTGCTTAGAAAGAGAGGTGCACCGGGAATGGTTACAAATTGAGAATTACATTACTGTTCTCATTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTACTCATCCTGTCTATGCTTGTAATGGATAATGCGCAGAACAAGGATGATATTGCTATAGTGGATAATGGACTAGGATTGATTGTTCGCTCACTTTCACGACAAGTTGAGGAGCGCAAGTTGGCATTGGAGTTGCTGTTGGAGCTATCTAAAAGTAAAACGTTGTGCAGTCTCATAGGAAACATTCAAGGAAGCATACTTCTGCTGGTAACAATGTTAAATAGTGATGATGTCGAAGCAGCCAAAAATGCACATGAGCTGCTGGAGAACCTCTCTTTCCTTGATCAGAATGTTATAGAGATGGCCAAGGCAAATTATCTTAAGCCTTTACTGCTGAAACTTTCTACAGGACCAGAAAATGTGAAAAGAGTCATGGCTGAAACTTTGTCAGAAATTACATTAATAGACCAGAATAAATTGTCTTTGGTCAAAGATGGGGCATTGCAACCTCTTCTTCAGCTGCTCTTAAATGATGATTTGGAAATCAAGAAGGTGTCTGTCAAAGCTTTACTACAGCTCTCAAGCATGCCAGAGAATTGCCTGCAGATGATTAAGGAAGGTGTTGCTCAACCACTGTTGGAACTGCTATACTGTCACAGTTTACAGTCACCTACTCTGCTTGAACAGGTTGTTGCCACAATAATGCATCTTGCGATGTCAACAACTCACCAACAAGCTGAAGCAGAACAGCTTTCGTTCTTAGATTCCGATGAAGATGTGTACAAATTCTTCTCTCTAATTTCTTTGACAGACCATGAGATACAAAACAAGATTCTCAAAGCTTTGCAGGCTCTGAGCCAATCTTTCTATGGCTTCCGCATCAGAAAGCGGTTGAGACAGATATCGGCCGCTAAATTATTGGTAAACTTATTGGAGACTAATACTCAAAAAGTGCGGGTCAATGCCTTGAAGCTTTTCTATTGCTTGACAGAAGACTATGATTATGGCAACATCTCACCACATATAACTGAAAGATTCATTGAAGTCTTGCTTGCCATCATTGAGGCTTCTGATGACGCAGAGGAGATGATTACTGTAATGGGTATCATTTCTAAACTACCGCAGGAGTCTCAGATGACCCAGTGGCTTCTAGATTCTGGGGCACTTAAAACTATTTTGACTTGTCTTACCGATCAACATAGCCATGCCTCAGACAAAATCATAGAGAACTCTGTTCAAGCTCTTTGTCGTTTCACTGTCTCGTCGAATCTGGAGTGGCAGAAGAGTGTGGCTTTAGAAGGCATAATCCCAGTACTGGTGCAACAACTGCTTTCTGGAACACCCTTTACAAAACGAAATGCAGCCATTTCGATCAAACAGTTTTCGGAAAGTTCCTATCGCTTGAGCGAGCGGATAAAGAAGCCAGGTATTTACAAATGCTGCTTTGTAGCCCGAGAAACTGGTTGCCCAGCACACTTAGGCACCTGCTCAATCGAGAATTCATTCTGCATTCTGCAAGCTAATGCCTTGGAGCCCCTTGTGCGCTTGCTTAGTGACACGGATGTTAGAACCTGCGAAGCTTCCTTAGATGCGATACTAACTTTGGTTGATAGTGAAGCACCGCAGAGTGGAAGTAAGGTACTTGCAAATTCAAATGCCATTGCACCGATGTTACAATTATTGAGTGTTGAAGCTCCCAGGTTGCAGGAAAAAATTCTAATAGCTTTAGAACGAATTTTTCAACTAGATGAAGTGAGAAATAAGTACAAAGCTATGGCTACAATGGCCTTGGTAGGCATAACTCAAGGGAAAGATAGCCTTTTGAAAAGTCTTGCTGGTAGAGGCCTTGCTCAATTGGATATACTTGATAAACAGTCTTCTTATTTTTAG 3018 0.4119 MENELLTRASLAPTSELLSRTILAVFETVKAANEVVIHKENFKRFAIHLENVSFILKSLSKEGIHNGWSLQKAMAGLNREVEVAKQLSVECNSRSKVYLLINSRKIVTRLNCCTKDIGRAITLIPLASLNISSGLNQQISELCQKMLDAEYQTAAIDEEILKKVETAIQEGNVDRSYATQLLAGTARAIGVPVEHGALKREFEDLKNEMENAKSRMDMSEALHMEQIIAVLGKADFITSAQEKESKYFEKRNSLGERPLRALHSFYCPISHEIMVDPVETSSGKTFERSEIEKWFAEGNNLCPLTRLPLDTRILRPNKTLKMSIQEWKDRNTMITISTIKSELETNDEEEVIRSLDKLQDLCLEREVHREWLQIENYITVLIGLLSSKNREIRKRVLLILSMLVMDNAQNKDDIAIVDNGLGLIVRSLSRQVEERKLALELLLELSKSKTLCSLIGNIQGSILLLVTMLNSDDVEAAKNAHELLENLSFLDQNVIEMAKANYLKPLLLKLSTGPENVKRVMAETLSEITLIDQNKLSLVKDGALQPLLQLLLNDDLEIKKVSVKALLQLSSMPENCLQMIKEGVAQPLLELLYCHSLQSPTLLEQVVATIMHLAMSTTHQQAEAEQLSFLDSDEDVYKFFSLISLTDHEIQNKILKALQALSQSFYGFRIRKRLRQISAAKLLVNLLETNTQKVRVNALKLFYCLTEDYDYGNISPHITERFIEVLLAIIEASDDAEEMITVMGIISKLPQESQMTQWLLDSGALKTILTCLTDQHSHASDKIIENSVQALCRFTVSSNLEWQKSVALEGIIPVLVQQLLSGTPFTKRNAAISIKQFSESSYRLSERIKKPGIYKCCFVARETGCPAHLGTCSIENSFCILQANALEPLVRLLSDTDVRTCEASLDAILTLVDSEAPQSGSKVLANSNAIAPMLQLLSVEAPRLQEKILIALERIFQLDEVRNKYKAMATMALVGITQGKDSLLKSLAGRGLAQLDILDKQSSYF* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0087 1005 CDD RING-Ubox_PUB 265 306 IPR045210 -
Vra10g0087 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1005 - -
Vra10g0087 1005 Gene3D - 333 459 IPR011989 -
Vra10g0087 1005 Gene3D - 460 536 IPR011989 -
Vra10g0087 1005 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1005 - -
Vra10g0087 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 332 IPR013083 -
Vra10g0087 1005 SUPERFAMILY RING/U-box 251 333 - -
Vra10g0087 1005 SUPERFAMILY ARM repeat 872 995 IPR016024 -
Vra10g0087 1005 SUPERFAMILY ARM repeat 533 852 IPR016024 -
Vra10g0087 1005 Gene3D - 863 987 IPR011989 -
Vra10g0087 1005 Gene3D - 667 857 IPR011989 -
Vra10g0087 1005 SUPERFAMILY ARM repeat 335 624 IPR016024 -
Vra10g0087 1005 Gene3D - 537 640 IPR011989 -
Vra10g0087 1005 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vra10g0087 1005 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vra10g0087 1005 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Vra10g0087 1005 Pfam MCAfunc domain 29 168 IPR045766 -
Vra10g0087 1005 Coils Coil 195 222 - -
Vra10g0087 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Vra10g0087 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Vra10g0087 1005 SMART arm_5 490 530 IPR000225 GO:0005515
Vra10g0087 1005 SMART arm_5 531 571 IPR000225 GO:0005515
Vra10g0087 1005 SMART arm_5 572 615 IPR000225 GO:0005515
Vra10g0087 1005 SMART arm_5 752 796 IPR000225 GO:0005515
Vra10g0087 1005 SMART arm_5 872 913 IPR000225 GO:0005515
Vra10g0087 1005 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Vra10g0087 1005 Pfam Armadillo/beta-catenin-like repeat 875 908 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0087 Vra-Chr10 2819958 2825567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0087 264 1005 U-box Gene Family AT1G20780 27.757 3.86e-56 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0087 - - gmx:100818273 1571.99