Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0079 ATGGGAGGTTCATCGGAGACGAAGTTCTTGCAAGACCTGTTGTTGTATGCTGCGAGCGCGGCGTTGAGTTGCTTGGTGTTGTTCGCGGGACTCAGACACCTCGATCCTAATCGCGAAGCTTCCAAAAAGGTTCTTGAGCACAAGAAAGAGATTGCAAAGCGTCTCGGTCGCCCCCTTATTCAGACTAACCCTTACGAGGATGTTATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTTAATTCTATTGGGGGACTGGAAACCATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGATTTGTTTTCACATGGTAAGCTTCTTGGACCACAAAAGGGGGTTCTGTTGTATGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCGGGAGCAGTTTTTATCAATGTGAGGATATCAAACCTTATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCGGTATTTAGCCTGGCTTATAAGCTTCAGCCTGCCATCATTTTCATTGATGAAGTAGACAGTTTTTTGGGACAACGCCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAGTTTATGGCTTTGTGGGACGGATTTACTACGGATCAGAATGCTCGAGTTATGGTCCTTGCAGCGACAAATCGTCCTTCAGAACTTGATGAAGCAATACTACGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCTGATCACAGGGAGAGGACTGAAATATTGAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGACAACATAGAGTTTGGTCATATAGCAGGCTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTGCTAGATGAAGAGAAGAAAGGAAAACGATCTCCTGCACCTAGACCTTTGTCCCAGTTAGATTTGGAGAAGGCCATTGCCACTTCACAGAAGACAAAGGTTGCTGCAAGTGAATACGCTGGATTCAGCCTTCAGTCACCTTCAAGATGGTCGGTGCCTGGTGATTCAGACTAA 1092 0.4478 MGGSSETKFLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKVLEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDHRERTEILKVILKGERVEDNIEFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKRSPAPRPLSQLDLEKAIATSQKTKVAASEYAGFSLQSPSRWSVPGDSD* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0079 363 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 3 343 - -
Vra10g0079 363 CDD AAA 116 251 - -
Vra10g0079 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Vra10g0079 363 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Vra10g0079 363 SMART AAA_5 118 254 IPR003593 -
Vra10g0079 363 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Vra10g0079 363 Pfam AAA+ lid domain 275 310 IPR041569 -
Vra10g0079 363 Gene3D - 253 335 - -
Vra10g0079 363 Gene3D - 80 338 IPR027417 -
Vra10g0079 363 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0079 Vra-Chr10 2668689 2675195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0079 39 318 Calmodulin-binding Proteins AT3G56690 32.394 1.39e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0079 K22530 - gmx:100796908 682.945