Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0070 ATGATGGAGGGAGATGAGAATATTCAAGCATCAAAGGGAAAAAATGTTGAAAGCTTCTCTAGCTTGGAGGCACCAAGGAAGAAAAACAAGAAGATAGAAAACAAGAGGAGGTTCAGTGATGAACAGATAAGGTCACTAGAATGCATATTTGAGACAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAACTGGCAAGAGATCTTGGCCTGCAGCCTCGCCAAGTTGCCATATGGTTTCAAAACAGAAGAGCGAGGTGGAAATCAAAACGCATAGAGCAAGAATACAGGAAACTGAAGGATGAATATGACAATTTAGCATGTAGGTTTGAGTCCCTAAAGAAAGAGAAGGAGTCTTTGCAAGTAGAGTTGCAGAAGCTAAGTGATTTGGTGGTGTCATCACATGATGGTGGAAGGGAAGACAAGGGTGCCAAAGAACACAGCATAGAGGATGGTGGTTCAGGAAGTGGATACAGCAGTTGGAAGCCTGAAGCAAAACCAAGGTTTTCAAATGAGGGTTTGGAAGATAGAGTAGGTGTGTATTCAGATGATCAAAATGAGAATAGCATCATGAGGAGTGAGAAATCTGAGGACAAAGGACACCAACTTCTCAGAATGGATGATAATGATCACGCTGAGATGCCATTAGCATCACTTGAAAAATGGTACAGTAGTGTGGACCCTAATGGCATCTTGGACCAGTCATGTAGCAGCTCTCAGTGGTTAGATTTCTGGACTTAA 738 0.4255 MMEGDENIQASKGKNVESFSSLEAPRKKNKKIENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLACRFESLKKEKESLQVELQKLSDLVVSSHDGGREDKGAKEHSIEDGGSGSGYSSWKPEAKPRFSNEGLEDRVGVYSDDQNENSIMRSEKSEDKGHQLLRMDDNDHAEMPLASLEKWYSSVDPNGILDQSCSSSQWLDFWT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0070 245 SUPERFAMILY Homeodomain-like 21 89 IPR009057 -
Vra10g0070 245 Pfam Homeodomain 35 87 IPR001356 GO:0003677
Vra10g0070 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 245 IPR045224 GO:0003700
Vra10g0070 245 MobiDBLite consensus disorder prediction 132 148 - -
Vra10g0070 245 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 245 - -
Vra10g0070 245 MobiDBLite consensus disorder prediction 21 36 - -
Vra10g0070 245 CDD homeodomain 35 90 IPR001356 GO:0003677
Vra10g0070 245 Gene3D - 24 98 - -
Vra10g0070 245 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Vra10g0070 245 Coils Coil 81 129 - -
Vra10g0070 245 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Vra10g0070 245 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
Vra10g0070 245 SMART HOX_1 32 93 IPR001356 GO:0003677
Vra10g0070 245 MobiDBLite consensus disorder prediction 1 36 - -
Vra10g0070 245 Pfam Homeobox associated leucine zipper 89 129 IPR003106 GO:0006355|GO:0043565
Vra10g0070 245 MobiDBLite consensus disorder prediction 132 199 - -
Vra10g0070 245 MobiDBLite consensus disorder prediction 167 199 - -
Vra10g0070 245 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0070 Vra-Chr10 2453979 2455466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0070 1 245 Homeobox Transcription Factor Family AT2G46680 40.000 3.95e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra10g0070 Homeodomain 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0070 K09338 - gmx:100793260 437.187