Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0062 ATGATGAGCTACGTTCCACTTCTCTTGCTCTCTTGTTTCCTATTTTATCATTTTCATGCCATCTCATGCAACAGTAACACAGACAGAGAAGCCCTTCTTTCTTTCAAATCTCAAGTCACTGACCCTAAAAATGCTCTCTCTGGCTGGTCTATACACTCCAATCACTGCACCTGGTACGGTGTCACATGCTCCAAACTTGAAAACAGGGTCCAATCTCTCAATCTAACAGGACTTTCCCTCTCTGGCATACTGCCCCCTCACCTTTCCAACCTCACTTTCCTACACTCACTCGACCTTTCCAACAATACTTTTCACGGCCGAATTCCTGCATCATTTGCCAATCTCTCTTCTCTTCAGAATCTTTCCTTGGCAAGGAACCGTTTGGAGGGGGAGATTCCAACTCAACTTGGTAATCTCCGCCATCTTTCCTTTCTTCAAATCTCAGTAAACAATTTCTCTGGCAACTTTCCCTCTTCTATCTTCAACATCTCTTCCTTAGTCTTTTTATCCGTCACAGAAAACAAGCTAACAGGAAAGTTACCAAATAATTTTGGCAATTTTCTTCCAAATTTAATGATTCTATACCTGGCAACTAATATGTTTGAAGGGGTAATTCCCAATTCCATATCCAATGCCTCACATCTTCAAGAGATTGACCTTGCCAACAATGAATTTACTGGACCCATACCTCTATTCTGCAACTTAAAAAACCTTACCCATCTCATTCTTGGTAATAATTCTATCTCTTCCACAACCTCGTTAAATTTTCAGTTCTTTAATTCCCTTAGAGACTCCACCCAGCTACAAATTCTCATGATCAATGATAACCTTTTGGCTGGGGAGCTTCCAAAATCTTTTGCTAATCTGTCGTCAAATCTCCAACATTTCTGTGTAGCTAATAATAATCTTACCGGTACTATTCCTCAAGGAATGAAGAAATTCCAAAATCTCATATCCTTGTCTTTTGAAAACAATTATTTCACTGGAGAATTACCATCAGAAATAGGAGCACTCAATAATCTACAGCAACTTGTTATACACCACAACAGATTGTCTGGGGACATTCCAGACATTTTTGGCAATCTCACAAGTCTCTTTAACCTTGCAATGGGAAATAACCAACTCTCGGGTAGAATTCACCCAAGTATTGGACAATGCAAGAAATTAAATTATCTTGACGTGTCAAAGAATAGACTTGGTGGGACCGTACCAGATGAGATTTTTCAACTTTCTAGCTTAATTATGTTGTATTTAGCAGGAAACTCTCTGCAGGGTCCGCTACCTCCTATGGTGGGCACCATGAAACAGCTTGAGGACGTGGACATTTCTGACAACCAGTTGTCAGGGAACATTCCTGTGGAAATAGAGGAGTGTTTGAACTTGAAGTGGCTAACGATGGAAAGAAACAGATTCAATGGTTCGATCCCAACAAAAATTGGGAATTTAGCATCCCTTGAGACTTTGGATTTATCATTAAACAGTCTCACTGGTGATATTCCTGAAAGTTTAGGAAAGCTCGAGTATATACAGAATTTAAATTTGTCTTTCAACCATTTGGAAGGGAAGATTCCTACAAAAGGTGTTTTTACGAACCTTACCAAGTTTGATCTTCGAGGTAACAATCAACTCTGTAGCCTTAGCAAGGAAATTGTACAAAATTTGGGAGTGCTCCCGTGTGTTGTTGGCAAAAAGAAAAGAAGAATCTTACTCCCTACCATACTTGCAATAGTTGGTGCTGCTGCTTTGTTCATTTCACTGCTCTTTCTGTTTTGGACAATGAAGAAGAAAAGAAAGGAGAGGAAAACCCTTGTGTCATCTGACCCTTTCAGGGGGTTGTCTCAAAATATAACTTATGGTGATATTCGGATAGCTACAAACAATTTTGCAGCTGAAAACTTAATTGGAAAAGGAGGTTTTGGCTCCGTGTACAAGGGTGTGTTCAGCTTCAGCACTGGTGAAACCGTCACCCTTGCTGTCAAAGTCTTGGATCTGCAAGAAAGCAAAGCGTGTAAGAGTTTCAACGCCGAATGTGAAGCTTTGAAAAATGTCAGGCATCGGAACCTAGTAAAGGTTATCACTTCTTGCTCCAGCCTTGATTATAAAGGAGAGGAATTTAAGGCCCTAGTCATGCAATTCAAGCCCAATGGCAACTTGGACTTCAAAATACACCAAGGAGATGAAGAGTCAGGCTCCCTTCTAACCTTGATGCAAAGATTGAACATTGCAATCGATGTTGCTTCTGCTCTGGAGTACTTGCACCATGACTGCGATCCACCTATAGCGCATTGTGATCTGAAACCTGCCAATGTCCTTCTAGATGAAAATATGACTGCACATGTTGTAGATTTTGGATTGGCAAGGTTTTTGTATCAAAACCCATCAGAGAAGCAGAGTAGCACTCTAGGACTGAAAGGATCAATTGGCTACATTGCCCCAGAATATGGTTTTGGAAGTAAGGCTTCAACTGAGGGTGATGTGTACAGTTTTGGGATCCTACTGCTAGAGATGTTCACAGGCAAAAGACCAACTGATGAAATGTTCAAAGAAGGGTTAAGCCTCAACAAATTTGTCTCAAGCATGGATGAGAATGAAGTTGTGAAGGTTGCTGCTGATCGAAGACTCATTGAAGATTATGAATATTCAACACAAAGCTCAAACAGTGATGATCATAGCAGTGGTTTTGACAGCAACACACGTTGGTTGCATAAAGCTGAGGAGTGCATCGCTGATGTGATAAGAGTTGGTCTGAGTTGCACAGTTGATCAACCCAAAGAACGATGGAACATGAGAAAGGCCTTATCAAAATTGCAAGCTACAAAGAACTCTATGCTGTCTTTTTGA 2841 0.4058 MMSYVPLLLLSCFLFYHFHAISCNSNTDREALLSFKSQVTDPKNALSGWSIHSNHCTWYGVTCSKLENRVQSLNLTGLSLSGILPPHLSNLTFLHSLDLSNNTFHGRIPASFANLSSLQNLSLARNRLEGEIPTQLGNLRHLSFLQISVNNFSGNFPSSIFNISSLVFLSVTENKLTGKLPNNFGNFLPNLMILYLATNMFEGVIPNSISNASHLQEIDLANNEFTGPIPLFCNLKNLTHLILGNNSISSTTSLNFQFFNSLRDSTQLQILMINDNLLAGELPKSFANLSSNLQHFCVANNNLTGTIPQGMKKFQNLISLSFENNYFTGELPSEIGALNNLQQLVIHHNRLSGDIPDIFGNLTSLFNLAMGNNQLSGRIHPSIGQCKKLNYLDVSKNRLGGTVPDEIFQLSSLIMLYLAGNSLQGPLPPMVGTMKQLEDVDISDNQLSGNIPVEIEECLNLKWLTMERNRFNGSIPTKIGNLASLETLDLSLNSLTGDIPESLGKLEYIQNLNLSFNHLEGKIPTKGVFTNLTKFDLRGNNQLCSLSKEIVQNLGVLPCVVGKKKRRILLPTILAIVGAAALFISLLFLFWTMKKKRKERKTLVSSDPFRGLSQNITYGDIRIATNNFAAENLIGKGGFGSVYKGVFSFSTGETVTLAVKVLDLQESKACKSFNAECEALKNVRHRNLVKVITSCSSLDYKGEEFKALVMQFKPNGNLDFKIHQGDEESGSLLTLMQRLNIAIDVASALEYLHHDCDPPIAHCDLKPANVLLDENMTAHVVDFGLARFLYQNPSEKQSSTLGLKGSIGYIAPEYGFGSKASTEGDVYSFGILLLEMFTGKRPTDEMFKEGLSLNKFVSSMDENEVVKVAADRRLIEDYEYSTQSSNSDDHSSGFDSNTRWLHKAEECIADVIRVGLSCTVDQPKERWNMRKALSKLQATKNSMLSF* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0062 946 SUPERFAMILY L domain-like 25 305 - -
Vra10g0062 946 ProSiteProfiles Protein kinase domain profile. 628 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0062 946 SUPERFAMILY Protein kinase-like (PK-like) 604 936 IPR011009 -
Vra10g0062 946 PANTHER RECEPTOR-LIKE PROTEIN 55 115 936 - -
Vra10g0062 946 PANTHER RECEPTOR-LIKE PROTEIN 55 85 134 - -
Vra10g0062 946 PANTHER RECEPTOR-LIKE PROTEIN 55 2 89 - -
Vra10g0062 946 SMART LRR_sd22_2 482 514 - -
Vra10g0062 946 SMART LRR_sd22_2 115 141 - -
Vra10g0062 946 SMART LRR_sd22_2 529 548 - -
Vra10g0062 946 SMART LRR_sd22_2 235 256 - -
Vra10g0062 946 SMART LRR_sd22_2 265 291 - -
Vra10g0062 946 Gene3D Ribonuclease Inhibitor 313 550 IPR032675 -
Vra10g0062 946 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Vra10g0062 946 Pfam Leucine rich repeat 189 248 IPR001611 GO:0005515
Vra10g0062 946 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515
Vra10g0062 946 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515
Vra10g0062 946 Gene3D Ribonuclease Inhibitor 24 312 IPR032675 -
Vra10g0062 946 Pfam Protein tyrosine and serine/threonine kinase 631 849 IPR001245 GO:0004672|GO:0006468
Vra10g0062 946 SMART LRR_typ_2 362 386 IPR003591 -
Vra10g0062 946 SMART LRR_typ_2 338 361 IPR003591 -
Vra10g0062 946 SMART LRR_typ_2 115 139 IPR003591 -
Vra10g0062 946 SMART LRR_typ_2 235 261 IPR003591 -
Vra10g0062 946 SMART LRR_typ_2 188 211 IPR003591 -
Vra10g0062 946 SMART LRR_typ_2 410 434 IPR003591 -
Vra10g0062 946 SMART LRR_typ_2 482 506 IPR003591 -
Vra10g0062 946 SMART LRR_typ_2 91 114 IPR003591 -
Vra10g0062 946 SMART serkin_6 628 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0062 946 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 85 134 - -
Vra10g0062 946 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 115 936 - -
Vra10g0062 946 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 89 - -
Vra10g0062 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Vra10g0062 946 Gene3D Transferase(Phosphotransferase) domain 1 714 944 - -
Vra10g0062 946 SUPERFAMILY L domain-like 291 547 - -
Vra10g0062 946 Gene3D Phosphorylase Kinase; domain 1 590 712 - -
Vra10g0062 946 ProSitePatterns Protein kinases ATP-binding region signature. 634 660 IPR017441 GO:0005524
Vra10g0062 946 ProSiteProfiles Leucine-rich repeat profile. 237 258 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0062 Vra-Chr10 2240380 2243480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0062 27 926 Receptor kinase-like Gene Family AT3G47570 40.102 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vra10g0062 PK_Tyr_Ser-Thr 7.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0062 - - gmx:100776054 1329.31