Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0039 ATGAGTTTATTTCCTTGTTGTGCATCACAAAAGAGGCTCAACAAGAAGACATTGAAGAAGAGCATTAAGAAAGAAAAAGAATACGAAGATAGAAGACGTGTCACCTCATTTTCTAACATCTCTTATAAATCAGATAGTGGCAAGAGGAAGTTCATAACAGATGAGATAGCAAGGCTTGGGAAAGGAAACATTAGCTCTAAGATAATTTCTTATCGTGAGATATGTGCTGCAACTCAGAACTTTCACCCTGACAACATGATTGGTGAAGGAGGCTTTGGGAGGGTATACAAAGGATACCTTAAAAGCACTAATCAAACTGTTGCTGTGAAGCAACTTGACAGAAATGGATTTCAAGGAACCAGAGAATTTCTTGTAGAGGTTTTAATTTTGAGTCTTTTGCACCATCCTAATCTTGTTAACTTGATAGGGTATTGTGCTGAAGGAGAACATAGAATTTTGGTGTATGAATACATGGTCAATGGTTCTCTAGAAGATCACTTACTGGACTTACCTGAAGGAGCAAAGGCTTTGGACTGGCAAACCAGAATGAAAATTGCAGAAGGTGCAGCAAAAGGACTTGAATATCTGCATGACGAAGCAAACCCTCCAGTGATATATCGTGATTTCAAAGCATCAAACATATTGTTAGATGAAGAGTTCAATCCAAAACTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACAGGAGACAAAAGACATGTGTCTACAAGAGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCATCAACAGGGCAATTGACTACAAAATCAGATGTCTATAGCTATGGAGTTGTGCTTTTGGAGATGATCACAGGAAGAAGAGTCATTGAATATTCAAGACCAGAAGAAGAGCAAAATTTAGTTCTTTGGGCACAACCACTCTTAAAAGATAGGAAGAAATTTACACAAATGGCAGATCCATTGTTAAAATGTGAGTATCCTGTAAAAAGTTTATACCAAGCTTTAGCAGTGGCAGCAATGTGTCTCCAAGAAGAAGATGAAACTCGACCTTTAATCAGTGATGTAGTTACAGCAGTTGAATTTTTGGCAAGGAAGAGAGTAGAAGAGAATGAACCACAATCCACCAAAAAAATTTCTTCTACTGAAGAAGAAGAAGAAGACAGTAATGAACACAACCAATCTCATAAAGATCGAGACGATAACCACAATGATCAGAACCAAGATGAAGAAAAGAAGAATTGA 1230 0.3772 MSLFPCCASQKRLNKKTLKKSIKKEKEYEDRRRVTSFSNISYKSDSGKRKFITDEIARLGKGNISSKIISYREICAATQNFHPDNMIGEGGFGRVYKGYLKSTNQTVAVKQLDRNGFQGTREFLVEVLILSLLHHPNLVNLIGYCAEGEHRILVYEYMVNGSLEDHLLDLPEGAKALDWQTRMKIAEGAAKGLEYLHDEANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKRHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSYGVVLLEMITGRRVIEYSRPEEEQNLVLWAQPLLKDRKKFTQMADPLLKCEYPVKSLYQALAVAAMCLQEEDETRPLISDVVTAVEFLARKRVEENEPQSTKKISSTEEEEEDSNEHNQSHKDRDDNHNDQNQDEEKKN* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0039 409 ProSiteProfiles Protein kinase domain profile. 81 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0039 409 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Vra10g0039 409 Pfam Protein kinase domain 82 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0039 409 PANTHER OS07G0668900 PROTEIN 1 373 - -
Vra10g0039 409 MobiDBLite consensus disorder prediction 362 409 - -
Vra10g0039 409 Gene3D Transferase(Phosphotransferase) domain 1 158 385 - -
Vra10g0039 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vra10g0039 409 CDD STKc_IRAK 87 352 - -
Vra10g0039 409 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 373 - -
Vra10g0039 409 SUPERFAMILY Protein kinase-like (PK-like) 65 357 IPR011009 -
Vra10g0039 409 Gene3D Phosphorylase Kinase; domain 1 41 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0039 Vra-Chr10 1755593 1757728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0039 63 359 Glycoside Hydrolase AT3G07070 70.370 6.76e-157 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra10g0039 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0039 - - gmx:100790474 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0039 10 1755593 1757728 Vra6g0266 6 1974205 1976505 PCT