Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0036 ATGTCGCCCAGCTTCGTCTTCGAACCTCCCAGCGACGAAGAAATCGAACACTCCGAACGAGAAGAGGAAGAAGAAGACGAAGAAGAACAAGAGGAAGCTGAGTCAGGATCAGATTCTGACTCAGAAGAAGAGGGACGGCACAAAGAAGCGCGGGTTTCGAAGAAGAAAACGCAGTCTCCATGGGACTTCGCCAAATACACGGAATCAGTGGCCGAGGAACACGCTCGCAGGAGCACAACCTCTGTGGACGAGAAAATCTCCAAAGCTCTCCGACAACGTTCTACGCCGCTCGTTGCGGAGCTTGACCACAGCTCCGAGTCTGAACTTGATGAACAAGAAGATTATAAACCGGATGAAGAAGACGAAGAGGAGGGTTATGGTGGTGATAGCAAGTCCTTTTTTGCTCCTTCTGATGGAACCTCTTTCCATGCCGATTCCTTCCTGCAGCTTAATTTGTCTCGTCCTTTGCTCCGGGCTTGTGAGGCCCTGGGGTATGCTAAACCAACGCCAATTCAGGCAGCATGTATTCCATTGGCATTGTCTGGTCGTGATATATGTGGGAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACGCTAGAGAGGTTGTTGTTCCGTCCAAAACGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAATTGGCCGTCCAAGTTCACAGTATGATAGAAAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGTTGCTTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATTGACCATTTACGCAATGCTATGTCTGTTGATTTGGATGATCTTGCTGTTCTCATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGTTTGTGCCCCAAAAAAAGGCAGACTATGCTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATTAAGCTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCTGCAACCTTGACTGAGGAAGTTGTCAGAATACGAAGAATGCGTGAAGTAAACCAGGAGGCCGTTCTTCTTGCAATGTGCTCAAAAACTTTTACCTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCAGCACATAGATTAAAGATTATATTTGGATTAGCTGGCATAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGTCTGGAAGCTTTGGAACAGTTTAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACAGATGTGGCTGCTCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACTAGCTATGTTCATCGTGTGGGTCGGACTGCAAGAGCTGGAAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGATCGATCACTTTTAAAAGCCATTGCCAAGAGGGCCGGTTCAAAGTTGAAAAGCCGCATTGTTGCTGAGCAATCTATACTTAAGTGGTCTCATATTATTGAGCAAATGGAGGATCAAATTGATGAAGTACTTCGAGAAGAGAGTGAAGAAAGAGCCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGAACATAAGGACGAGATCTTTTCCCGTCCCAAAAGAACATGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCCAAAGCAGCTAAGGCATCCTCCCTAGAGAAGAACAAGAGTTCTGGGAAAGAGGTAATTAGCGCCGAACAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAACATTTGCCTAGAAAGAAGCGCAGAAAGTTAGAAGCAGCTAGAGAGATGTTGGAGGATGAGGAGCAGGATGGTAACCAAGTAGAGGCCAAGGGGACGAATAAAAAAGAAAAGGGTGGATTGTCACTTGTTGATCTTGCTTACAGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCAGTGGATTCTGGCAAGATTGTGAAGAAGAGTCAGAAGAAATCTAGTAATGTTCCCAGAAAAACTCCCTCAAGGACAGAAGAGATGAGGGATCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAAAGAAGAGGTGTTGGAGGAGGAAAGAAGGCGAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2259 0.4586 MSPSFVFEPPSDEEIEHSEREEEEEDEEEQEEAESGSDSDSEEEGRHKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALRQRSTPLVAELDHSSESELDEQEDYKPDEEDEEEGYGGDSKSFFAPSDGTSFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGIKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHIIEQMEDQIDEVLREESEERALRKAEMEATKAENMIEHKDEIFSRPKRTWFVTEKEKKLAAKAAKASSLEKNKSSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEDEEQDGNQVEAKGTNKKEKGGLSLVDLAYRRAKAVKAVKKAVDSGKIVKKSQKKSSNVPRKTPSRTEEMRDLFQTDMKDKKPKRRGVGGGKKAKSSFKSKSRYKRK* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0036 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 505 IPR027417 -
Vra10g0036 752 Coils Coil 580 600 - -
Vra10g0036 752 MobiDBLite consensus disorder prediction 67 90 - -
Vra10g0036 752 MobiDBLite consensus disorder prediction 706 729 - -
Vra10g0036 752 Pfam DEAD/DEAH box helicase 169 339 IPR011545 GO:0003676|GO:0005524
Vra10g0036 752 CDD DEADc_DDX27 156 351 - -
Vra10g0036 752 CDD SF2_C_DEAD 362 494 - -
Vra10g0036 752 MobiDBLite consensus disorder prediction 730 752 - -
Vra10g0036 752 Pfam Helicase conserved C-terminal domain 382 485 IPR001650 -
Vra10g0036 752 MobiDBLite consensus disorder prediction 591 668 - -
Vra10g0036 752 MobiDBLite consensus disorder prediction 106 126 - -
Vra10g0036 752 PANTHER RNA HELICASE 51 276 - -
Vra10g0036 752 PANTHER RNA HELICASE 301 732 - -
Vra10g0036 752 Coils Coil 11 31 - -
Vra10g0036 752 MobiDBLite consensus disorder prediction 604 622 - -
Vra10g0036 752 MobiDBLite consensus disorder prediction 15 39 - -
Vra10g0036 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 524 IPR001650 -
Vra10g0036 752 MobiDBLite consensus disorder prediction 40 58 - -
Vra10g0036 752 Coils Coil 523 570 - -
Vra10g0036 752 PANTHER BNAA01G17110D PROTEIN 51 276 - -
Vra10g0036 752 PANTHER BNAA01G17110D PROTEIN 301 732 - -
Vra10g0036 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 350 IPR014001 -
Vra10g0036 752 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 296 304 IPR000629 -
Vra10g0036 752 Gene3D - 352 521 IPR027417 -
Vra10g0036 752 MobiDBLite consensus disorder prediction 1 134 - -
Vra10g0036 752 SMART ultradead3 164 365 IPR014001 -
Vra10g0036 752 Gene3D - 107 351 IPR027417 -
Vra10g0036 752 SMART helicmild6 400 485 IPR001650 -
Vra10g0036 752 Coils Coil 638 658 - -
Vra10g0036 752 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Vra10g0036 752 MobiDBLite consensus disorder prediction 637 665 - -
Vra10g0036 752 MobiDBLite consensus disorder prediction 686 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0036 Vra-Chr10 1672914 1681510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0036 133 502 Eukaryotic Initiation Factors Gene Family AT3G13920 33.512 6.84e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0036 K13181 - gmx:100776684 1114.37