Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0029 ATGATTTCTTCCTTGAGACAGCCTGTTGTGGGGATCAGTGGTTCTGATCTTCTTTTGAGGCAAAGACATGCAACCCCAGTTAAGGCACGGTCGTTTTTGCCTTCTTTGGCAAGGGAAAAGGGACATGGATCTCTGGTTTCAGTGCATAAGCCACTGCACATTGCTTCTTCTCTTGGTGGTGCAAATTTCTCTTCAGTGAAGAGTGGTGGAAAGGGTGATTTGGTGAAGTGCGAGGCCTATGAGGCAGACAGATCAGAGGTTGAGGCTACAAACACACCATCAGAGGCTTCAAAGAAGGTGAAGATTGGCATATATTTTGCAACCTGGTGGGCTCTGAATGTGGTGTTTAATATTTATAACAAGAAGGTGTTGAATGCCTACCCCTTCCCGTGGCTGACTTCAACTCTCTCACTTGCATGTGGGTCTCTCATGATGTTGATCTCTTGGGCCACTGGGATTGCAGAAGCCCCCAAGACTGATCCTGAGTTTTGGAAGTCTTTGTTTCCTGTTGCCGTTGCACATACAATAGGACATGTGGCAGCAACTGTTAGTATGTCAAAAGTTGCGGTATCATTTACACATATAATCAAGAGTGGTGAGCCTGCTTTTAGTGTTCTGGTTTCAAGATTTCTCTTGGGTGAGACTTTCCCCGTGCCAGTCTATCTGTCTTTACTTCCGATCATTGGTGGATGTGCACTTGCAGCCGTGACTGAACTCAATTTCAACATGACTGGTTTCATGGGTGCTATGATATCGAATTTGGCATTTGTATTCCGTAATATATTTTCAAAAAAGGGAATGAAGGGAAAGTCTGTCAGTGGAATGAATTACTATGCTTGTTTATCTATTTTGTCCCTTGCAATTCTCACACCCTTTGCAATTGCCGTGGAAGGACCACAGATGTGGATTGCCGGATGGAAAACATCGATCTCTCAGATTGGAAACCAACTCATATGGTGGGTAGCAGCTCAAAGTGTATTCTATCACTTATACAATCAAGTGTCATACATGTCTCTGGATGAGATCTCTCCCTTAACATTTAGCATTGGAAACACCATGAAACGTATATCTGTCATAGTGTCTTCGATTATTATCTTCCACACTCCAGTTCAACCTGTTAATGCTCTTGGTGCCGCTATTGCTATCCTTGGAACCTTCTTATATTCACAGGCAAAACAATAG 1182 0.434 MISSLRQPVVGISGSDLLLRQRHATPVKARSFLPSLAREKGHGSLVSVHKPLHIASSLGGANFSSVKSGGKGDLVKCEAYEADRSEVEATNTPSEASKKVKIGIYFATWWALNVVFNIYNKKVLNAYPFPWLTSTLSLACGSLMMLISWATGIAEAPKTDPEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLAILTPFAIAVEGPQMWIAGWKTSISQIGNQLIWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPVQPVNALGAAIAILGTFLYSQAKQ* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0029 393 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 30 392 - -
Vra10g0029 393 PANTHER SOLUTE CARRIER FAMILY 35 30 392 - -
Vra10g0029 393 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 101 392 IPR004696 GO:0016021|GO:0022857|GO:0055085
Vra10g0029 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 292 390 - -
Vra10g0029 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 144 236 - -
Vra10g0029 393 Pfam Triose-phosphate Transporter family 101 389 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0029 Vra-Chr10 1486346 1490863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0029 44 392 Antiporters AT5G54800 80.618 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0029 K15283 - gmx:100801832 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0029 10 1486346 1490863 Vra6g0271 6 2004774 2008068 PCT