Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0020 ATGACTCCACCCAAAAGAAAGCCAACCAATGGCTCAAAAAAGAAGTCAAGGTCCACCTCTCCAATGGATGAATCCCCTGAGTCTTCTGTGAATGTCTTCACTTTTAACGTGGCTCCCAACAGTGATGTCATGCAGTGTATATCTGACATTGCTAGCAGGGACCAGGTTAGTGTTACTGTGATTAGTGCCACTGGCAAAATCAACAAGGTGACTCTCAAATCTTCAACCAATGGTGAACCCGATCTCATGCTCCATGGACCACTCACCTTGGTCTCCCTCACAGGCTCCTACTTATACAACAATCAGTACACCCTTCACCCTGGGGCCACCCCTCCCCTTTCCTTATCCTTTGGGATCAACCTCTCCACCATTGGAGGCAAGGTCTTTTGTGGCGTTGTTGGTGGTAGAGTCATTGCTGGTGAGAATGTTAAGATCACAGTCTACACCTATACGAACCCTAACATTTTGAAGTATTCGGCCGAAGGTCAAGAAGACAGTGGTAATGATAATAATGATGATGAAAATCACAAGAATAACAATTTTGGTGATGACCAATGA 558 0.4516 MTPPKRKPTNGSKKKSRSTSPMDESPESSVNVFTFNVAPNSDVMQCISDIASRDQVSVTVISATGKINKVTLKSSTNGEPDLMLHGPLTLVSLTGSYLYNNQYTLHPGATPPLSLSFGINLSTIGGKVFCGVVGGRVIAGENVKITVYTYTNPNILKYSAEGQEDSGNDNNDDENHKNNNFGDDQ* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0020 185 SUPERFAMILY AF0104/ALDC/Ptd012-like 28 154 - -
Vra10g0020 185 ProSiteProfiles PPC domain profile profile. 27 171 IPR005175 -
Vra10g0020 185 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 6 179 - -
Vra10g0020 185 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 179 IPR014476 GO:0003680
Vra10g0020 185 Pfam Plants and Prokaryotes Conserved (PCC) domain 32 150 IPR005175 -
Vra10g0020 185 MobiDBLite consensus disorder prediction 160 185 - -
Vra10g0020 185 CDD DUF296 31 140 IPR005175 -
Vra10g0020 185 Gene3D - 29 174 - -
Vra10g0020 185 MobiDBLite consensus disorder prediction 169 185 - -
Vra10g0020 185 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0020 Vra-Chr10 1041696 1042253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0020 4 176 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 22.857 4.65e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0020 - - vun:114188422 188.348