Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0019 ATGGAGTGCATCTTTCACATTGCTCACAAGGACGACGTTAATGTCACTGTCCTTAATGCCTCTGGCACAATTAACAGTGTCATCCCACACAACTCCACCTACGGTGCCACTGATATCATCATGCATGGGCCTTTCCCCTTACTCTCCTTTTCTGGTTCCTACTTCTACAACAACCATAACACCCTTCACCCTGGACCCACCCTTCCGTTTCCCTTATGTTTTGGGATAAACGTTTTAACCTCTCAGGATGAAATCCTTGGTGGTGTTATTGGCGGTAGTCTCATCTCCGGTGACGGTGTCACCCTCACCATCTCCACCTTTAAGAACCCTAGTTTCTTAAACTACACTTATCAAGTTGGAGAAAGGCATAACAATGATAACATCACATCTGGTGATTTCAATTAG 405 0.4494 MECIFHIAHKDDVNVTVLNASGTINSVIPHNSTYGATDIIMHGPFPLLSFSGSYFYNNHNTLHPGPTLPFPLCFGINVLTSQDEILGGVIGGSLISGDGVTLTISTFKNPSFLNYTYQVGERHNNDNITSGDFN* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0019 134 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 119 IPR014476 GO:0003680
Vra10g0019 134 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 119 - -
Vra10g0019 134 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 108 IPR005175 -
Vra10g0019 134 ProSiteProfiles PPC domain profile profile. 1 129 IPR005175 -
Vra10g0019 134 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0019 Vra-Chr10 1037853 1038257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0019 1 124 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 29.134 8.33e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0019 - - vra:106774654 277.715