Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0018 ATGAAACGATCCACAAGGAAGCCTGTGGGAAGGCCCCCAGGGTCCAAGAATAAGTCAAGCTCCAGCACTCAACCAGTGTCCCGACCTCTGGAGCCCTCCATGAAGGTCTTTTCTTTTAGGGTACCCCCAAACAAGGACATCATGGAGTTCATCTTGAACATTGCTCATAATGGTCATGTCAGTGTGGCCATCATTAGTGCCTCTGGCACAGTCAACAATGTGACCCTTCAAAACTCAACCATGCAGCATGGTCCCTTCACTTTGCTCTCCCTTGCTGGTTCCTACTTATACAACAACCTCTATACCCTTTACCCTGGAGCCACCCCTCCCTTTCCCCTATCTTTCACCATCAACCTCTCAACCCCTAATGGCCACATATTCGGAGGTGTCATTAGTGGTAGCGTCATTGCCCGTCAAGATGTTAAACTCACCGTCTCGACCTTCAAGAACAGTGGTATCCTCAAGTTTCCTCCAGATCTCGATAACAATCAAAACAATAACATCAGCACTTCCACCAAAAACAACACTGAATGA 534 0.4775 MKRSTRKPVGRPPGSKNKSSSSTQPVSRPLEPSMKVFSFRVPPNKDIMEFILNIAHNGHVSVAIISASGTVNNVTLQNSTMQHGPFTLLSLAGSYLYNNLYTLYPGATPPFPLSFTINLSTPNGHIFGGVISGSVIARQDVKLTVSTFKNSGILKFPPDLDNNQNNNISTSTKNNTE* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0018 177 MobiDBLite consensus disorder prediction 14 29 - -
Vra10g0018 177 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 4 167 - -
Vra10g0018 177 SUPERFAMILY AF0104/ALDC/Ptd012-like 33 153 - -
Vra10g0018 177 Pfam Plants and Prokaryotes Conserved (PCC) domain 36 149 IPR005175 -
Vra10g0018 177 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 167 IPR014476 GO:0003680
Vra10g0018 177 ProSiteProfiles PPC domain profile profile. 31 170 IPR005175 -
Vra10g0018 177 Gene3D - 33 168 - -
Vra10g0018 177 MobiDBLite consensus disorder prediction 1 29 - -
Vra10g0018 177 CDD DUF296 35 137 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0018 Vra-Chr10 952825 953358 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0018 6 175 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.022 1.95e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0018 - - vun:114188423 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0018 10 952825 953358 Vra6g0403 6 3251069 3254655 PCT