Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0017 ATGGTGCCCAATTTTATCATTTCAAGATTAGTTGCATCATCATCATTCACTGGCTACAAGGGTAGTCATGTTCTATTGGGTTCTCTGCTTTCATGCAAACACACTGCTTCACTTGTTTTCTTCAATTATTTCACTTCAGACACTTCCTCTGATTCTAAATCAGATGGAAAGCAACACAAAGGTTCCACCTTTACTGTGTCTGACCTCATCAACTCATGTGGGATGTCCCAAACTCTGGCTAGGGAACTCTCCAACAGGGTCAATTTGAAAACCTCAGATGGCCCAAATGCAGTCATTGATATCCTCAGCATCTATGGGTTCTCAAAATCCCAGCTTGCAAAGCTTGTGGTGAGACATCCTTCCGTGCTATTTACAAATGTAGAAGATACCCTTTTGCCTAAACTCGAATTCTTTCGTTCTATTGGGATGTCCAACACTGAAATACCTAAGATCCTGATTGCCAACCATGGTATCTTGAAGAGGCACTTGGAAAACTGCATCATCCCTCGCTATGAGATTCTAAAGAGTGTAGTTCATGCTGATCGGGAAGTTGTTAGAGCTATTAAAAATGCCCCACTTGGTTTTGTGTATGGTGACTTAATGAATAGGTTGGTTCCAAACATTGACATTTTGAGGGAATGTGGTGTGCCCCAGGCTTCCATCACTCACCTGGTGACTAATTCTCTGTCTGCAGCATATGTGGAGCATTCCAGGTTTGTGGAAGCTATCAAGACAGCTAAGGAAATTGGATTTAGTCCTTTAAAAATGGACTTTGTTGTTGCTATTCACGTGCTTGTAACTATGAGGAAAGAAGTGTGGGAGTCAAGGTTTGAGGTTTATGAAAGGTGGGGCTGGAACCGGGAAATGGCTCTTCGAGCATTTAGGAAGTTTCCCAGTTTTATGAAGTTTTCAGGGGATACATTTTCCAGAAAGATGAGTTTCCTTGTGAAGGATATGGGTTGCTCATCAGAAGCTATTGCTGAATATCCTCTAGTTGTAGCCTACAGTTTGGAGAAGAGGATTATTCCTAGATTCTCTGTAATAAAAATCTTGAAATCAAAAGGTCTTCTTGAGAAAAACGTGCACTTTAGTTCCATTATTTGCACAACTGAGGAAAAGTTCTTGGAGAAATTTGTCGTCAATTTTCAGAATGTTTTGCCCCTCCTACCAGACCTCTACAGAGGACTGGAGTTCGAAACACTTGATTGGCACAGGATGTGA 1221 0.4136 MVPNFIISRLVASSSFTGYKGSHVLLGSLLSCKHTASLVFFNYFTSDTSSDSKSDGKQHKGSTFTVSDLINSCGMSQTLARELSNRVNLKTSDGPNAVIDILSIYGFSKSQLAKLVVRHPSVLFTNVEDTLLPKLEFFRSIGMSNTEIPKILIANHGILKRHLENCIIPRYEILKSVVHADREVVRAIKNAPLGFVYGDLMNRLVPNIDILRECGVPQASITHLVTNSLSAAYVEHSRFVEAIKTAKEIGFSPLKMDFVVAIHVLVTMRKEVWESRFEVYERWGWNREMALRAFRKFPSFMKFSGDTFSRKMSFLVKDMGCSSEAIAEYPLVVAYSLEKRIIPRFSVIKILKSKGLLEKNVHFSSIICTTEEKFLEKFVVNFQNVLPLLPDLYRGLEFETLDWHRM* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0017 406 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 45 395 - -
Vra10g0017 406 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Vra10g0017 406 SMART mt_12 256 286 IPR003690 GO:0003690|GO:0006355
Vra10g0017 406 SMART mt_12 185 217 IPR003690 GO:0003690|GO:0006355
Vra10g0017 406 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Vra10g0017 406 SMART mt_12 323 357 IPR003690 GO:0003690|GO:0006355
Vra10g0017 406 SMART mt_12 149 181 IPR003690 GO:0003690|GO:0006355
Vra10g0017 406 PANTHER CGI-12 PROTEIN-RELATED 45 395 IPR003690 GO:0003690|GO:0006355
Vra10g0017 406 Pfam mTERF 267 375 IPR003690 GO:0003690|GO:0006355
Vra10g0017 406 Pfam mTERF 100 304 IPR003690 GO:0003690|GO:0006355
Vra10g0017 406 Gene3D Transcription termination factor 3, mitochondrial 181 385 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0017 Vra-Chr10 716173 723421 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra10g0017 mTERF 7.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0017 K15032 - gmx:100786641 598.201