Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0014 ATGGTAACCATCAAAGCTTCGTACACAGTAGTTCCGAATCAACCAACTCCAGGAGGTATCCAATGGCTCTCTGATATCGATCAAGTGGCGCGTCTGTGCCATACACAGACCATCTACGTTTTCCATGCAAAGCACAACCATGACGCATTAGTTGAACAGATGAGAAACTCTCTTAGCAAACTTTTGTCGCATTACTATCCAGTTGCTGGTAGATTGAGAAGGTTAGAAGAAGGTGACAGATGGGAATTGGATTGTAATGCAAAAGGAGCGGTGTTGATTGAAGCAGAATCCACAAAAACAGCGAACTATTATGGTGACTTTTTGGGTGAATCCGCCAATGACTTGGTTCCAACAGTCAATTACACAAAAACCTTCATTGAGGAACTTCCCTTGTTACTAGTGCAAGTAACAAGCTTCCTTGGTGATGAAGCGTTTTGCATTGGGGTTGCTATATCTCATCTTTTGTTTGATGGTATTTCTGCCATTCACTTCATCAATTCATGGGCAAAGTTGGCTCGTGGAGACACATTAGAGCCTCATGAAATGCCCTTTCTGGATCGAACTGTGCTAAAATTCACTAATCCTCCATCAACCTCACGCTTTGATCACCAAGAGTTCAAGCCTATGCCTCTCATATTACGAAGAAGTGACAACACTGTTGAGAGAAACAAGAGGGTAAATGCCACTACGTTGAAGCTGACAGCAGAACAAGTGGCACTAATAAAAAATAGGGTTTATACAGCACACATTATGTCACAGTTCACCAGAAACCGCAGCACAATGGTGTGCGGTGATAGTTTTGTAAATAAATCGAACTTATATGCTGTGGTTCACCTCTTAACTGCGACATATACCCCAGTCAACCATCACCTTTGA 876 0.4235 MVTIKASYTVVPNQPTPGGIQWLSDIDQVARLCHTQTIYVFHAKHNHDALVEQMRNSLSKLLSHYYPVAGRLRRLEEGDRWELDCNAKGAVLIEAESTKTANYYGDFLGESANDLVPTVNYTKTFIEELPLLLVQVTSFLGDEAFCIGVAISHLLFDGISAIHFINSWAKLARGDTLEPHEMPFLDRTVLKFTNPPSTSRFDHQEFKPMPLILRRSDNTVERNKRVNATTLKLTAEQVALIKNRVYTAHIMSQFTRNRSTMVCGDSFVNKSNLYAVVHLLTATYTPVNHHL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0014 291 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 4 246 - -
Vra10g0014 291 Gene3D - 1 208 IPR023213 -
Vra10g0014 291 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 246 - -
Vra10g0014 291 Pfam Transferase family 1 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0014 Vra-Chr10 587745 588969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0014 2 244 Monolignol Biosynthesis Gene Families AT5G48930 33.878 4.35e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0014 K13065 - gmx:100778626 365.925