Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0013 ATGGTAACCATCAAAGCTTCTTACACAGTAGTTCCAAATCAACCAACTCCAGAGGGTTATCAATGGCTGTCTGATCCTGATCAAGTGGCGCGTCAGAGCCACACCCCCACCATCTACGTTTACCATGCAAAGCACAACCATAAGGCATTAGTTGAACACATAAGAAACTCTCTTAGCAAGATTTTGTGTTACTACTATCCAGTAGCTGGTAGATTGAGAAAGTTAGAAGAAGATGGCAGGTTGGAATTGAATTGTAACGCAAAAGGAGCGGTGTTGATTGAAGCAGAATCCACAAAAACAGTGCATGATTATGGTGACTTTATGGATGAGTCCGCCAAGGACTTGGTTCCAACAGTTGATTACACAAAAACCCCAATTGAGGAACTTCCCTTGTTAGTAGTGCAAGTAACGAGTTTCCTTGGCGATGAAGCTTTTTCCATTGGAGTTGCTATATCTCATACTTTGACTGATGGTGTTGCTGCCATTCAGTTCATCAACTCATGGGCAAAGTTGGCTCGTGGACACACATTAGAGCCTCATGAAATGCCCTTTCTGGATCGAACTGTGCTGAAATTCACAGCCCCTCCATCACCCCCACGCTTTGATCACCAAGAATTCAAGCCTTTGCCTCTCCTATTAGGACGAAGTGACACCACTCTTGAGAGAAGCAAGAAGGTAAGTGCCATGACGTTGAAGCTGACAGCAGAACAAGTGGGGAAGTTGAAGAACAAGGCCAATGCTGATAAATCAACAGAAGGGTCAAGACCTTATAGCAGATTTGAGGCCATTGGTGCACATGTATGGAGATGTGCATCTAAGGCTCGTGGATTAGATGAGAAACAACCAACTCTGCTTCGGTTCAATGCTGATATTCGCAATAGAGTAATTCCACCTCTCCCTAGGAATTACTTTGGGAATGCTTTGGTCTTAAAAACTGCATCATCGCGCGCTGGAGAAATCTTATCAACTTCTTTGGGTCATGCAGCTCAGAAAATAAGAGAAGCAGTTGAAGAACTTACATATGAGTATATAACATCACAGTTTGACCTTATTAGAAGTCAAGACGATATGGATAAAGCAAGGGCTTTGTCCTTTGGAATAAATGAAGGTAAGGATGCAGTGTTTGTTGGGAATCCTAACCTTCGTATTACAAGTTGGCTGAGTATGCCAATGCATGGAGCAGATTTTGGGTGGGGAAAGCCTGTGTATTTTGGTCTAGCAGGTGGGACTGTACAGGAGAGGGCACTGATTACCCACGATCCAGATGGTGATGGCTCTGTTATTCTGTTTCTACACTTTCAAACGGATCATATTCAGCTTTTCAAGAACTATTTCTATAATGATATATAA 1350 0.4289 MVTIKASYTVVPNQPTPEGYQWLSDPDQVARQSHTPTIYVYHAKHNHKALVEHIRNSLSKILCYYYPVAGRLRKLEEDGRLELNCNAKGAVLIEAESTKTVHDYGDFMDESAKDLVPTVDYTKTPIEELPLLVVQVTSFLGDEAFSIGVAISHTLTDGVAAIQFINSWAKLARGHTLEPHEMPFLDRTVLKFTAPPSPPRFDHQEFKPLPLLLGRSDTTLERSKKVSAMTLKLTAEQVGKLKNKANADKSTEGSRPYSRFEAIGAHVWRCASKARGLDEKQPTLLRFNADIRNRVIPPLPRNYFGNALVLKTASSRAGEILSTSLGHAAQKIREAVEELTYEYITSQFDLIRSQDDMDKARALSFGINEGKDAVFVGNPNLRITSWLSMPMHGADFGWGKPVYFGLAGGTVQERALITHDPDGDGSVILFLHFQTDHIQLFKNYFYNDI* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0013 449 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 449 - -
Vra10g0013 449 Gene3D - 215 448 IPR023213 -
Vra10g0013 449 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 4 449 - -
Vra10g0013 449 Pfam Transferase family 1 446 - -
Vra10g0013 449 Gene3D - 1 208 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0013 Vra-Chr10 537226 540197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0013 2 446 Monolignol Biosynthesis Gene Families AT5G48930 34.899 3.97e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0013 K13065 - gmx:100778626 682.945