Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0012 ATGCACCATTTTCTGCTTGCTAGATTAACAACTAGGACCCCCCACTTTGGTGTTGTTTGCCACAATGCCATTCTTTTCTTCAATTCACGTACTTTATCTGTATCAAACACAAATAATCACAAAGGTGGCACCTTTAATGCATTTAGCATCATCAATTCATGTGGGTTGTCCCCTGAAAAGGCACTGGAAATGTCCAAAAGGTTGGAATTGAAAAACCCAGATGGGGCAAATGCTGCAATTGATCTTCTCAGGAACTATGGGTTCTTGGAGAGCCAGCTCAATAGCCTTATAAAGAAATTCCCTTCTGTGCTTTTCTCAAATTCAGACAAGATCCTTTTGCCAAAACTCAATTTCTTTCGTTCTATTGGGTTTTCAGCCACTGACCTTCCTAAATTCCTCGTTATGAAACCTACATTTCTTAAATCAAGCTTGGAGAAAACCATTATTCCTTGTTATGGGGTAATCAGAAGTCTAGTTCGCAATGATAATGAAGCAGTTTCCACTTTAAAGCATGGGCTGTGGCACTGTAGCAGAAATGTGGTGAATAATTCACTTCCAAACATAAAGGCTTTGAGACAGCTTGGTCTGCCTCAAAGCTCCATTTCTCTCCTGGTAGCCAATTTTCCTAGTGTCACATTTATGAAGCATGCAAAATTTGTTGAAGCTATGGAGAAAGTGAGGGAACTGGGGTTTGATCCTTTGAAAACAAATTTTGTTATGGCACTTAAAGTTTTTTCAGATATGAGTGAAGCATCATGGAAATCGAAGTTCGAGGTTTTGGAGAAGTGTGGCTGGTCAAGTGATATGTTTCTTTTAGCTTTCAAGAAGCATCCCCAGTTTATGGTCTCATCAGAACACAAGATTCTTAAAATAATGAGCTTTTTGATGAAGGATGTAGGTTTGGCCCCCGAAGACATTGCTAGATGCCCTGCGCTTCTTAAATGCAACTTGGAGAAGACAGTTATTCCTAGATTTGCAGTAATTAAAATTTTGAAGAGAAGGGGTTTGGTAAAGAGTGATTTGCAAATAAGTACTTTTATTAAGATTAGTGAAAAATTGTTTCTGAAGAAATATGTGACTCGATTTCAGAGTTATGAGCCACTAGTTTTGGCTGCATACAAAGCTCAGAACTCAAATTGA 1140 0.3851 MHHFLLARLTTRTPHFGVVCHNAILFFNSRTLSVSNTNNHKGGTFNAFSIINSCGLSPEKALEMSKRLELKNPDGANAAIDLLRNYGFLESQLNSLIKKFPSVLFSNSDKILLPKLNFFRSIGFSATDLPKFLVMKPTFLKSSLEKTIIPCYGVIRSLVRNDNEAVSTLKHGLWHCSRNVVNNSLPNIKALRQLGLPQSSISLLVANFPSVTFMKHAKFVEAMEKVRELGFDPLKTNFVMALKVFSDMSEASWKSKFEVLEKCGWSSDMFLLAFKKHPQFMVSSEHKILKIMSFLMKDVGLAPEDIARCPALLKCNLEKTVIPRFAVIKILKRRGLVKSDLQISTFIKISEKLFLKKYVTRFQSYEPLVLAAYKAQNSN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0012 379 Gene3D Transcription termination factor 3, mitochondrial 161 367 IPR038538 -
Vra10g0012 379 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Vra10g0012 379 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Vra10g0012 379 SMART mt_12 236 266 IPR003690 GO:0003690|GO:0006355
Vra10g0012 379 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vra10g0012 379 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Vra10g0012 379 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Vra10g0012 379 PANTHER CGI-12 PROTEIN-RELATED 25 376 IPR003690 GO:0003690|GO:0006355
Vra10g0012 379 Pfam mTERF 80 307 IPR003690 GO:0003690|GO:0006355
Vra10g0012 379 Pfam mTERF 292 354 IPR003690 GO:0003690|GO:0006355
Vra10g0012 379 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 25 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0012 Vra-Chr10 497464 498813 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra10g0012 mTERF 8.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0012 K15032 - gmx:106799612 521.546