Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0008 ATGTGCATATATTCTTTCTTTAAGGTTCTCTTGTTGCTGCTTCTGCACGACGTGAAAGTGAAGAACATGAAGAATTCTAAGAAAACGGGTGTACGGAAATACCAAAAATCAGAAAATCCACGTCTGCGATGGACACCTGAACTCCATGAATACTTTGTAGAAGTTGTGGAAGGTCTTGGTGGAAAAAACAAGGCAACTCCAAAGAGCATTCTGCAGATGATGCATGTGAAAGGACTAAGAATCTCTCACATTAAAAGCCATCTTCAGATGTACAGGAACCTGAAGGGACATACGATTCTCTCATCAATGCATCAGGAAATGGAAGGGAATGAAGATGGTAAAGATCTTCTAATGTGCTCCAATTGTTCGTCCCAAAGATCACAAGAAACAAAATTTAGGGCATCAAAATATGATATGGGAATTGTGACTCAAGAAATTCGCCCGTCAGAAAATAAAGGACTTTCACAAACCAGTGAAACAGATTACGATCTAAATCAGGAACCCGAATCTTGTGCATACATACATAGTGAGACATCAAATGAAGAAAATAGTAGAAGAATGAAATATCTTGATTTCACATTCTCTTTTAGCTCTCAACTAATTCCAACCATGCATGGTAATCAAGAGAGGATGCATTTTTCTTCAGCAAATGCAGCAGATAATCATGCCATTGATTCTAATTCTGTACAATCTCGTGGGAGCAACAACTACATAAATTTAGACCTAGCAATATGA 735 0.3782 MCIYSFFKVLLLLLLHDVKVKNMKNSKKTGVRKYQKSENPRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQMYRNLKGHTILSSMHQEMEGNEDGKDLLMCSNCSSQRSQETKFRASKYDMGIVTQEIRPSENKGLSQTSETDYDLNQEPESCAYIHSETSNEENSRRMKYLDFTFSFSSQLIPTMHGNQERMHFSSANAADNHAIDSNSVQSRGSNNYINLDLAI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0008 244 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Vra10g0008 244 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 30 158 IPR044848 GO:0003700
Vra10g0008 244 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 39 93 IPR006447 GO:0003677
Vra10g0008 244 Gene3D - 39 95 - -
Vra10g0008 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 96 IPR017930 -
Vra10g0008 244 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Vra10g0008 244 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 30 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0008 Vra-Chr10 372348 380361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0008 30 92 G2-like Transcription Factor Family AT1G14600 68.254 2.79e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra10g0008 Myb_DNA-binding 3.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0008 - - vun:114187568 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0008 10 372348 380361 Vra6g0324 6 2434637 2437575 PCT