Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi99g00054 ATGGGGACCAAGGCAAAGCAAGCTATAAAGAAGAGTTTGAAAAAGTTTAATGTTACTATTAAGCCAGCTGAGGGTGCTGATTTTTTGCCATTGGCAGGTGGTCCGGGTCGCAAACTTCCAGAACTTAAACCGTTGGAGAATACTTCCCCTGTTTTGTATATTGGTAGGATTCCACACGGGTTCTATGAGAAGGAGATGGAAGCTTATTTTGCACAATTTGGAACCATTAAGAGATTGAGAATTGCCAGAAATAAAAAGACCGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTTGCTGATACTATGCACAATTATTTGCTTTTCGAACACCTTCTTCAGGTTTATGTGGTACCTTCAGAAAATGTTCATCCCAGATTATGGAAAGGATTCAATTACCGTTACAAGCGGTTGGACTCTCTCGAAATTGAACGAAAGCGACATGACAAGGAAAGAACATTGGAAGAACACAAAAAGCTGGTTGATAGGGTTATGAAATGCGACAAAAAGCGTCGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGTCCTGAGATTGTGGGTAACCTCCATCCTGCTCCAAAGAAGATAAAGTTCGATGACTGA 633 0.4013 MGTKAKQAIKKSLKKFNVTIKPAEGADFLPLAGGPGRKLPELKPLENTSPVLYIGRIPHGFYEKEMEAYFAQFGTIKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVVPSENVHPRLWKGFNYRYKRLDSLEIERKRHDKERTLEEHKKLVDRVMKCDKKRRKRIEAAGIDYECPEIVGNLHPAPKKIKFDD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi99g00054 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Vivi99g00054 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Vivi99g00054 210 CDD RRM_NIFK_like 51 123 - -
Vivi99g00054 210 Gene3D - 35 125 IPR012677 -
Vivi99g00054 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 11 209 - -
Vivi99g00054 210 SUPERFAMILY RNA-binding domain, RBD 51 195 IPR035979 GO:0003676
Vivi99g00054 210 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi99g00054 52 123 Eukaryotic Initiation Factors Gene Family AT1G71770 30.556 3.06e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi99g00054 K14838 - gmx:100778780 342.043