Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi99g00045 ATGGGCCGTGGAAGAATAACTATGGAACTCATTCAAAATGAGAAAGCAAGAAAGACAACATTCCATAAGAGAAAGAATGGATTGTTGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATATTTGTGTAATTCTCTATGCTCCAAACTTTGAAGGTCAAGGATATGTTGAACCTGAAACATGGCCCAGAGACACAAAAGAGGTAGAAAGAATTCTCGAAAAGTACTATAACACTACCAGCGATAGGCGCCCAAAGATCTATGATGTTCATGAATATTATAAAGAGAGAGTGAAAAAAATTGAATTTGAGGTTTCCAAAGTGCGCAAAGATAAGTTAAAGCTCATGTATCCAACTTGGGATCCATCTTTCGATTCTATTGGAGGGGAAGATTTGAGGCTACTTGCTAGAATATTGGATGCTAAGCTTGATGCTTGTAATCAAAAGATGAATATGCTAAAAGGAGATTTTAAGGAAAAAGCAATAGCTCAAGAATCACACAAGGTTGATCAACTTATGAATGCTCCTTACATTGCTTCAAATTCAAGTAACTACTACAATCTCATGCAAAACAACGTGCCTCAACCACAAATTTACCCTCCTCCATTGATTAATATTAATGATAAAAACCTAAACTCTTTAGGGTTTTTTCCATTTCAAATCGGGCAAAGCTCGCAGTCTTCTTCTATGCTTACCAACACACAAGGTTGCTCATATCAGGTCGAGCCTGTGGAGAGTAGATATACGCAACCTTATCCATATAAGCAAATTGATACTAATTGTGCGAATTGGAGCAATCAAGTTAATGCTAATGTTACTTATGAACCAAGTATCGGTACGATGAAGAATAATGAAGCTGTTGAAAATAATGAAAACGTGTTACCATACTATTACAATGGAAATGCTATGCAATCATATCCTATTGCTATGCATACTCTTCCTCATCAGAATCATCAAAACCTACCTCATGGATACCAACTAAATGGATTTTATGATATGGATTTTCTTCAAGGTCATCATATCTTCAACTATACGGATGGAAGGAAGTAG 1053 0.3571 MGRGRITMELIQNEKARKTTFHKRKNGLLKKVNEFSILCDVDICVILYAPNFEGQGYVEPETWPRDTKEVERILEKYYNTTSDRRPKIYDVHEYYKERVKKIEFEVSKVRKDKLKLMYPTWDPSFDSIGGEDLRLLARILDAKLDACNQKMNMLKGDFKEKAIAQESHKVDQLMNAPYIASNSSNYYNLMQNNVPQPQIYPPPLININDKNLNSLGFFPFQIGQSSQSSSMLTNTQGCSYQVEPVESRYTQPYPYKQIDTNCANWSNQVNANVTYEPSIGTMKNNEAVENNENVLPYYYNGNAMQSYPIAMHTLPHQNHQNLPHGYQLNGFYDMDFLQGHHIFNYTDGRK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi99g00045 350 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi99g00045 350 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi99g00045 350 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Vivi99g00045 350 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 198 - -
Vivi99g00045 350 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi99g00045 350 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Vivi99g00045 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Vivi99g00045 350 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi99g00045 350 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi99g00045 350 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi99g00045 1 220 Type I MADS-box Gene Family AT5G55690 34.821 1.58e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi99g00045 SRF-TF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi99g00045 - - tpra:123913303 457.218