Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi997g00006 ATGGCCATTCGTCATCCTCGTTTTTTCAAGGTCATGCAGAATCACAAAGAGGAGATTAGACTTCCGAAGAAATTCGTGGAGAAATATTGGAAAGGAATTTCAAATCCGGTGTTACTTATTCTACCAAATGGAGTTGAACACAAAGTATTTTGGGTGGAACGTGACGGTGATATTTGGTTTCAAAAGAATTGGGAAAAACTTGCAAAATTTTTAAAATATTATTCTCGAATAAAATTTGTAAGTGAAGTTGGTGAAGCTGCAAAAGAAGCTGAAGACAATATTGAAGTGAGTGACAATAGGGATAAGAGTTTAGATGAGAGTGAACCATCCAAGCATGTTCAAATGAAAAAAGTTAATGGCAAGAGAAAAAGTATGGATTTTGATCCTACACATGAAAATATTTCAGGTACTAACATAGGAAGCATGACGAAGATGTCTAAAGAGTGTCAAACAGCCGAAACTATGAATGAGAACCCAAGGTTTGAAGTTAAATTGACACCATCTTCTATCCAAAACTATAGATTGAGGATACCAACTGAATTTTCTAGGGAATACTTGAACAAGTTCAATGGTACGACAACTATGAGAGTCGGTGAAGACGGAACTATGAAAGTTAAAATCAAGTTTGATGATATCTATAGTCGATCTATTGTGAGTGGCGGTTGGACAAGGATTGTTAAAAAGTATAAATTGCATGTTAATGATGTTTGTATATTTGAGATGATTCAACTCCAACCACCTTCCTTCGTTATTACTATTATTCGAGGAGAAGAAGAAGATCCAAGTCCTAAGAAATCGAAAGGTTACAAAGAAGGAAAATCTTGTGATAATATTGCAAAGAAAAAAGACATTCTAGAAACTTCTAGGAGCTGTCCAAAATTACATGTTCTAGATGATTTAGAAGACAATAGTGTGACTAAAAAGAATATATTTGAAGTTGTTGTGAATTCATCATACCCGTGTGTACCAAATGCGTTTATGAATAGACATGTTGGATGTCATGGAAAATTCTTGGAGTTGAAAGTGGAAGAAAAATCTTGGTTTGTGAAACTGAGTTATTATCCCACACACAGTACATTGTATGCAGGTTGGAGAAAATTTATGAAAGAATGCAAATTGGAGGTAGGAGATATTTGTTTCTTTGAGTTGGTCGATGAGAACAAATGTGTGTTTAAGGTTTCATTTGAAAGGAACAACCTAGGAGGAGATGTTAGATCTGTTTGA 1224 0.3464 MAIRHPRFFKVMQNHKEEIRLPKKFVEKYWKGISNPVLLILPNGVEHKVFWVERDGDIWFQKNWEKLAKFLKYYSRIKFVSEVGEAAKEAEDNIEVSDNRDKSLDESEPSKHVQMKKVNGKRKSMDFDPTHENISGTNIGSMTKMSKECQTAETMNENPRFEVKLTPSSIQNYRLRIPTEFSREYLNKFNGTTTMRVGEDGTMKVKIKFDDIYSRSIVSGGWTRIVKKYKLHVNDVCIFEMIQLQPPSFVITIIRGEEEDPSPKKSKGYKEGKSCDNIAKKKDILETSRSCPKLHVLDDLEDNSVTKKNIFEVVVNSSYPCVPNAFMNRHVGCHGKFLELKVEEKSWFVKLSYYPTHSTLYAGWRKFMKECKLEVGDICFFELVDENKCVFKVSFERNNLGGDVRSV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi997g00006 407 SMART B3_2 311 397 IPR003340 GO:0003677
Vivi997g00006 407 SMART B3_2 161 257 IPR003340 GO:0003677
Vivi997g00006 407 SUPERFAMILY DNA-binding pseudobarrel domain 314 395 IPR015300 -
Vivi997g00006 407 Pfam B3 DNA binding domain 163 255 IPR003340 GO:0003677
Vivi997g00006 407 Pfam B3 DNA binding domain 320 393 IPR003340 GO:0003677
Vivi997g00006 407 SUPERFAMILY DNA-binding pseudobarrel domain 4 69 IPR015300 -
Vivi997g00006 407 CDD B3_DNA 314 397 IPR003340 GO:0003677
Vivi997g00006 407 Gene3D - 141 258 IPR015300 -
Vivi997g00006 407 Gene3D - 298 399 IPR015300 -
Vivi997g00006 407 ProSiteProfiles B3 DNA-binding domain profile. 305 399 IPR003340 GO:0003677
Vivi997g00006 407 MobiDBLite consensus disorder prediction 90 118 - -
Vivi997g00006 407 CDD B3_DNA 159 255 IPR003340 GO:0003677
Vivi997g00006 407 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 14 263 IPR044837 -
Vivi997g00006 407 ProSiteProfiles B3 DNA-binding domain profile. 160 257 IPR003340 GO:0003677
Vivi997g00006 407 SUPERFAMILY DNA-binding pseudobarrel domain 157 259 IPR015300 -
Vivi997g00006 407 Gene3D - 2 74 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi997g00006 254 404 B3 DNA Binding Superfamily AT3G18990 27.119 3.00e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi997g00006 B3 1.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi997g00006 - - vvo:131638755 822.002