Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi997g00005 ATGGCCATTCGTCATCCTCGTTTTTTCAAGGTCATGCAGAATCACAAAGAGGAGATTAGACTTCCGAAGAAATTCGTGGAGAAATATTGGAAAGGAATTTCAAATCCGGTGTTACTTATTCTACCAAATGGAGTTGAACACAAAGTATTTTGGGTGGAACGTGACGGTGATATTTGGTTTCAAAAGAATTGGGAAAAACTTGCAAAATTTTTAAAATGTAATTATTTTTTAACTTTTAAATTTATATGTGAATCACATTTTAAGGTTAAAATATATGACACAAGCACTTTGGAAATAGATTATTCTCGAATAAAATTTGTAAGTGAAGTTGGTGAAGCTGCAAAAGAAGCTGAAGACAATATTGAAGTGAGTGACAATAGGGATAAGAGTTTAGATGAGAGTGAACCATCCAAGCATGTTCAAATGAAAAAAGTTAATGGCAAGAGAAAAAGTATGGATTTTGATCCTACACATGAAAATATTTCAGGTACTAACATAGGAAGCATGACGAAGATGTCTAAAGAGTGTCAAACAGCCGAAACTATGAATGAGAACCCAAGGTTTGAAGTTAAATTGACACCATCTTCTATCCAAAACTATAGATTGAGGATACCAACTGAATTTTCTAGGGAATACTTGAACAAGTTCAATGGTACGACAACTATGAGAGTCGGTGAAGACGGAACTATGAAAGTTAAAATCAAGTTTGATGATATCTATAGTCGATCTATTGTGAGTGGCGGTTGGACAAGGATTGTTAAAAAGTATAAATTGCATGTTAATGATGTTTGTATATTTGAGATGATTCAACTCCAACCACCTTCCTTCGTTATTACTATTATTCGAGGAGAAGAAGAAGATCCAAGTCCTAAGAAATCGAAAGGTTACAAAGAAGGAAAATCTTGTGATAATATTGCAAAGAAAAAAGACATTCTAGAAACTTCTAGGAGCTGTCCAAAATTACATGTTCTAGATGATTTAGAAGACAATAGTGTGACTAAAAAGAATATATTTGAAGTTGTTGTGAATTCATCATACCCGTGTGTACCAAATGCGTTTATGAATAGACATGTTGGATGTCATGGAAAATTCTTGGAGTTGAAAGTGGAAGAAAAATCTTGGTTTGTGAAACTGAGTTATTATCCCACACACAGTACATTGTATGCAGGTTGGAGAAAATTTATGAAAGAATGCAAATTGGAGGTAGGAGATATTTGTTTCTTTGAGTTGGTCGATGAGAACAAATGTGTGTTTAAGGTTTCATTTGAAAGGAACAACCTAGGAGGAGATGTTAGATCTGTTTGA 1305 0.3379 MAIRHPRFFKVMQNHKEEIRLPKKFVEKYWKGISNPVLLILPNGVEHKVFWVERDGDIWFQKNWEKLAKFLKCNYFLTFKFICESHFKVKIYDTSTLEIDYSRIKFVSEVGEAAKEAEDNIEVSDNRDKSLDESEPSKHVQMKKVNGKRKSMDFDPTHENISGTNIGSMTKMSKECQTAETMNENPRFEVKLTPSSIQNYRLRIPTEFSREYLNKFNGTTTMRVGEDGTMKVKIKFDDIYSRSIVSGGWTRIVKKYKLHVNDVCIFEMIQLQPPSFVITIIRGEEEDPSPKKSKGYKEGKSCDNIAKKKDILETSRSCPKLHVLDDLEDNSVTKKNIFEVVVNSSYPCVPNAFMNRHVGCHGKFLELKVEEKSWFVKLSYYPTHSTLYAGWRKFMKECKLEVGDICFFELVDENKCVFKVSFERNNLGGDVRSV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi997g00005 434 CDD B3_DNA 6 93 IPR003340 GO:0003677
Vivi997g00005 434 ProSiteProfiles B3 DNA-binding domain profile. 332 426 IPR003340 GO:0003677
Vivi997g00005 434 Pfam B3 DNA binding domain 190 282 IPR003340 GO:0003677
Vivi997g00005 434 Pfam B3 DNA binding domain 347 420 IPR003340 GO:0003677
Vivi997g00005 434 CDD B3_DNA 341 424 IPR003340 GO:0003677
Vivi997g00005 434 SUPERFAMILY DNA-binding pseudobarrel domain 184 286 IPR015300 -
Vivi997g00005 434 SUPERFAMILY DNA-binding pseudobarrel domain 4 95 IPR015300 -
Vivi997g00005 434 Gene3D - 2 96 IPR015300 -
Vivi997g00005 434 MobiDBLite consensus disorder prediction 157 174 - -
Vivi997g00005 434 Gene3D - 168 285 IPR015300 -
Vivi997g00005 434 Gene3D - 325 426 IPR015300 -
Vivi997g00005 434 MobiDBLite consensus disorder prediction 117 156 - -
Vivi997g00005 434 SMART B3_2 188 284 IPR003340 GO:0003677
Vivi997g00005 434 SMART B3_2 8 95 IPR003340 GO:0003677
Vivi997g00005 434 SMART B3_2 338 424 IPR003340 GO:0003677
Vivi997g00005 434 PANTHER B3 DOMAIN-CONTAINING 332 421 - -
Vivi997g00005 434 SUPERFAMILY DNA-binding pseudobarrel domain 342 422 IPR015300 -
Vivi997g00005 434 MobiDBLite consensus disorder prediction 117 174 - -
Vivi997g00005 434 ProSiteProfiles B3 DNA-binding domain profile. 187 284 IPR003340 GO:0003677
Vivi997g00005 434 CDD B3_DNA 186 282 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi997g00005 281 431 B3 DNA Binding Superfamily AT3G18990 27.119 2.81e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi997g00005 B3 1.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi997g00005 - - vvo:131638755 896.73