Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi997g00004 ATGGCAATTCAACAGCGTCCCAGTTTTCATAGAGTAATAATGAAGAATAAACAACTGAGAATTCCAAAATCATATGTTAAAAAATATTGGAATGGAACTTCAAATCCAATATTTCTTAGACTTCCAAATGGTGTTCAACAGAAAATATTTTGGATAGAGCGTGATGGAGATATTTGGTTTGATAAAAATTGGAAAAATTTTGCTAAGAATTTTCATTTTGCATATTTCTTAACTTTTAAATTTATAGATGAATCACACTTCAAAGTTAAGATATTTAATCGAAGTTGTTTAGAAATAAATTATTCTGATATAAGATGTGTAGATGAGGTTGATGAGAGTTTAGATGAGAGTGAAGAAGTTGCACTACCTAAAAAGAAAAAAAGTAACAAAAGAAAAAGAGAAGTTGATTCAGATTTGAATACTACCCAACCAAAACATGCAGGTAAAAAGAGATATGCTAATAATGGGAGGGCTAATAATGATAGTCCATATTTTGAAGTTACACTGAAACCATCTTACGCTAAAGGCTATACGTTGAGGATTCCAGTAGTGTTTTCGAGAAAATATTTCAAAAAGAGTGCAAGAAAAGCAATGATAAAATTTGAGAATGACATGGCTATGGAAGTGAATATTGAGTATAATGCTGACAATAGAGGATTTAGTATGAAACGTGGTTGGAAGAAATTTACAGAAAAATATAATTTAAAAATCGGTGATGTTTGTAAATTTGTGATGACTCAAGATCAACCACTTTCATTTTCTATTATCATTAATCGAGTCAGAAAGGAAAAGAAACATAAATTGTTTTCAGGTGTATCTTCTAGTGATACTACCGTTGCAAAGAAAAAAAGTGTGGGAGAAACTTCTAGAGGAAGATCAAAAGGTTCTAAAAGTCGTAATGTGATGAACTCGTCATTTAAGCTTCTTGTGAATTGTTTATATCCGAATGTTCCAAAGGAGCTTATGAATGGGCCAAAACAAATTGTAAAGCTAAATATGAAGGGAGAATCATGGTTGGTTAAAGTTAATTATTATCCGAGTATCAAGCGATGGAGGTTAAGTGGAGGTTGGTCCAAGTTTAGAAAAGATTGTAGGGTGGAGATAGGAGATACCTGTCTCTTTGAGTTGACAGATAAACAAAACATGGTGTTTGATGTTTCATTTGTAGGAAAGAATGCATGA 1182 0.3173 MAIQQRPSFHRVIMKNKQLRIPKSYVKKYWNGTSNPIFLRLPNGVQQKIFWIERDGDIWFDKNWKNFAKNFHFAYFLTFKFIDESHFKVKIFNRSCLEINYSDIRCVDEVDESLDESEEVALPKKKKSNKRKREVDSDLNTTQPKHAGKKRYANNGRANNDSPYFEVTLKPSYAKGYTLRIPVVFSRKYFKKSARKAMIKFENDMAMEVNIEYNADNRGFSMKRGWKKFTEKYNLKIGDVCKFVMTQDQPLSFSIIINRVRKEKKHKLFSGVSSSDTTVAKKKSVGETSRGRSKGSKSRNVMNSSFKLLVNCLYPNVPKELMNGPKQIVKLNMKGESWLVKVNYYPSIKRWRLSGGWSKFRKDCRVEIGDTCLFELTDKQNMVFDVSFVGKNA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi997g00004 393 Gene3D - 143 262 IPR015300 -
Vivi997g00004 393 Gene3D - 282 392 IPR015300 -
Vivi997g00004 393 MobiDBLite consensus disorder prediction 280 300 - -
Vivi997g00004 393 SUPERFAMILY DNA-binding pseudobarrel domain 317 384 IPR015300 -
Vivi997g00004 393 PANTHER B3 DOMAIN-CONTAINING 4 131 - -
Vivi997g00004 393 SUPERFAMILY DNA-binding pseudobarrel domain 159 250 IPR015300 -
Vivi997g00004 393 SMART B3_2 165 261 IPR003340 GO:0003677
Vivi997g00004 393 SMART B3_2 9 95 IPR003340 GO:0003677
Vivi997g00004 393 SMART B3_2 305 392 IPR003340 GO:0003677
Vivi997g00004 393 CDD B3_DNA 321 388 IPR003340 GO:0003677
Vivi997g00004 393 CDD B3_DNA 163 259 IPR003340 GO:0003677
Vivi997g00004 393 MobiDBLite consensus disorder prediction 121 145 - -
Vivi997g00004 393 Gene3D - 1 96 IPR015300 -
Vivi997g00004 393 Pfam B3 DNA binding domain 324 384 IPR003340 GO:0003677
Vivi997g00004 393 Pfam B3 DNA binding domain 165 253 IPR003340 GO:0003677
Vivi997g00004 393 CDD B3_DNA 7 93 IPR003340 GO:0003677
Vivi997g00004 393 ProSiteProfiles B3 DNA-binding domain profile. 164 261 IPR003340 GO:0003677
Vivi997g00004 393 SUPERFAMILY DNA-binding pseudobarrel domain 5 96 IPR015300 -
Vivi997g00004 393 ProSiteProfiles B3 DNA-binding domain profile. 325 392 IPR003340 GO:0003677
Vivi997g00004 393 MobiDBLite consensus disorder prediction 121 158 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi997g00004 6 260 B3 DNA Binding Superfamily AT3G18990 25.074 1.05e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi997g00004 B3 4.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi997g00004 - - vvo:131638761 780.785