Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi997g00003 ATGGCAACTCAAAAACGTCCAGATTTTCATAGAGCAATAATGCAGAGTAAACAACTTAGACTTCCCAAATTTTATGCCAAAAATTATTGGAATGGAACTCCTAATCCAATATTTCTCATACTTCCGAATGATAGGGAAAGTAAAGAGGGACCTAAAGAAACTGTTGAACTGAGTGATGAGAGTTTAAATGAGGTTGAAGAACTTGCACAAACTAGAAGGAGGCAAATTAACAAAAGTAAAAGGAAAGTTGATTCAGATTTGAATACTGCTCAGCCAAAAATTTCAGATGAAGTTGCTGGAAGTAAAGAAGGAGTTAAAGGAACTCGTGAACTGAGAGATGAAAGTTTGGATGAGAGTGAGCAACATAAGCAAACTGAAAGGAGAAAGAATAACAAAAGAAAAAGAAAAGTTGCTACCCAACCAAAAATTTCAGGTAGAAAAAGAAAAGACATAGTTAAGGAAGTTAACAACAATAGTCCATACTTTGAAGTTACACTAAAACCATCCTATGCTAAAGGCTATATGTTGAGGATTCCAATAGTGTTTACGAGAAAATATTTCAGAAAGAGTGAAAGAAAAGCAATGTTAAAGTTTGAGAATGACATGGCTATGGAAGTGATTATCGAGTATAATAATTACAACGGAGGATTTAGTATGAAACGTGGTTGGAAGAAATTTACAGATAAATATAATTTAAAAATTGGTGATGTTTGTAAATTTGTGATAACATCAGATCAACCACTTTCGTTTTCTGTTACTTTTACTCGAGTAAGAAAGGAAAAGAAACTTAAGAAGTTTTTAGGTGTATCTTTAAGTGATAGTACAGTTGCAAAGAAAAAAAGTGTGGGAGAAACTTCTAGAGGAAGACCAAAAGGTTCAAAAAGTTGTAATGTGATAAATTCGTCATTTAAGCTTTTTGTAAATTGCCTGTATCCGAAATTTCCAAAAAAATTTATGGATGGGCCAAAAAAAATCGTAAAGCTGAAAATGAAAGAAGAATCATGGTTGGTAAAAGTTAATTATTATCATAGTATCCAGGGATGGAGATTCAGTGGAGGTTGGTTAAAGTTTAGGAAAGATTGTATGGTGGAGATAGGAGATACCTGTCTCTTTGAATTAACTGATAACAAAAACATGGTGTTTGATGTTTCATTTGTAGAAAAGAACACATGA 1173 0.3274 MATQKRPDFHRAIMQSKQLRLPKFYAKNYWNGTPNPIFLILPNDRESKEGPKETVELSDESLNEVEELAQTRRRQINKSKRKVDSDLNTAQPKISDEVAGSKEGVKGTRELRDESLDESEQHKQTERRKNNKRKRKVATQPKISGRKRKDIVKEVNNNSPYFEVTLKPSYAKGYMLRIPIVFTRKYFRKSERKAMLKFENDMAMEVIIEYNNYNGGFSMKRGWKKFTDKYNLKIGDVCKFVITSDQPLSFSVTFTRVRKEKKLKKFLGVSLSDSTVAKKKSVGETSRGRPKGSKSCNVINSSFKLFVNCLYPKFPKKFMDGPKKIVKLKMKEESWLVKVNYYHSIQGWRFSGGWLKFRKDCMVEIGDTCLFELTDNKNMVFDVSFVEKNT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi997g00003 390 MobiDBLite consensus disorder prediction 43 149 - -
Vivi997g00003 390 CDD B3_DNA 314 385 IPR003340 GO:0003677
Vivi997g00003 390 ProSiteProfiles B3 DNA-binding domain profile. 333 389 IPR003340 GO:0003677
Vivi997g00003 390 MobiDBLite consensus disorder prediction 127 142 - -
Vivi997g00003 390 Pfam B3 DNA binding domain 162 252 IPR003340 GO:0003677
Vivi997g00003 390 Gene3D - 264 389 IPR015300 -
Vivi997g00003 390 Gene3D - 144 260 IPR015300 -
Vivi997g00003 390 MobiDBLite consensus disorder prediction 99 126 - -
Vivi997g00003 390 MobiDBLite consensus disorder prediction 45 87 - -
Vivi997g00003 390 SMART B3_2 162 260 IPR003340 GO:0003677
Vivi997g00003 390 SMART B3_2 306 389 IPR003340 GO:0003677
Vivi997g00003 390 SUPERFAMILY DNA-binding pseudobarrel domain 303 386 IPR015300 -
Vivi997g00003 390 ProSiteProfiles B3 DNA-binding domain profile. 161 258 IPR003340 GO:0003677
Vivi997g00003 390 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 299 384 IPR044837 -
Vivi997g00003 390 Coils Coil 62 82 - -
Vivi997g00003 390 CDD B3_DNA 160 240 IPR003340 GO:0003677
Vivi997g00003 390 SUPERFAMILY DNA-binding pseudobarrel domain 156 252 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi997g00003 273 384 REM Transcription Factor Family AT1G49480 27.642 1.52e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi997g00003 B3 2.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi997g00003 - - vvo:131642494 683.715