Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi997g00002 ATGGTTAAAGATGGAAAAATAAGGCTTCCAAAGGATTTCACTAAGAAATATAGTAATGATATGGTAAATCCTATATTTCTCAAGACTCCAGATGAGAAAAAATGGGAAATACATACCGTTAAAGCTGATGGTGATTTCTGGTTTCAAAAGGGTTGGAAGGATTTCGCTACATACTATTCATTAGCTCATGGAAACATGATAGTGTTTCAATATGAGAAAACTTCTCATTTTATGGTTCATATATTTGACAAGAGAACCCTTGAAATTGAATATCCGTTGCATGATATTCAACATGAACAAAACAATTTTGTGGAAATTAGTGATGACGAATAA 333 0.3183 MVKDGKIRLPKDFTKKYSNDMVNPIFLKTPDEKKWEIHTVKADGDFWFQKGWKDFATYYSLAHGNMIVFQYEKTSHFMVHIFDKRTLEIEYPLHDIQHEQNNFVEISDDE 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi997g00002 110 PANTHER B3 DOMAIN-CONTAINING 8 102 - -
Vivi997g00002 110 CDD B3_DNA 1 83 IPR003340 GO:0003677
Vivi997g00002 110 Gene3D - 2 86 IPR015300 -
Vivi997g00002 110 ProSiteProfiles B3 DNA-binding domain profile. 1 85 IPR003340 GO:0003677
Vivi997g00002 110 Pfam B3 DNA binding domain 2 84 IPR003340 GO:0003677
Vivi997g00002 110 SMART B3_2 1 85 IPR003340 GO:0003677
Vivi997g00002 110 SUPERFAMILY DNA-binding pseudobarrel domain 5 92 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi997g00002 2 91 B3 DNA Binding Superfamily AT3G18990 34.444 3.01e-17 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi997g00002 B3 4.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi997g00002 - - vvo:131638759 238.424