Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi98g00023 ATGGGACGTGTTATTAGGGCTCAACGAAAGGGAGCTGCTGGTTCCGTTTTCAAATCCCACACTCATCACCGGAAAGGACCAGCACGTAACGGTTACCTCAAGGGAGTCGTGACCGACGTTATCCACGATCCAGGTCGTGGTGCTCCTCTGGCCAAGGTTACCTTCCGCCATCCCTTCCGTTACAGGGATCAGAATGAACTTTTTGTTGCCGCGGAAGGTTTATACACTGGGCAATTCATCTACTTCTGTAAAAAAGCTACCCTAGCCGTTGGTAACGTGCTTGCTCTGAGATATACCCCAGAGGGAGCCCTTATCTGCAATGTTGTTATCAGTGACAACCTTGATAACAACACATCTAGGATCAAGCTTCCTTCTGGTTCAATAAAGATTGTGTCGAGAAACTGCTGGCCTAAGGTTCGCGATGTTGCGATGAATCCAGTTGAGCATCCCCACGGAGGAGGTAACCACCAGCATATTGGTCATGCAAGTACTGTCAGACGTGATGCACCTCCTCGACAGATGATTGGTCTCCTTGGTTTGAAGAAGATTGGTCGGTTTAGAGGACATGCTGCTGCAAGTGCTGCTAAGGGTGATAAGTAA 600 0.4883 MGRVIRAQRKGAAGSVFKSHTHHRKGPARNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYRDQNELFVAAEGLYTGQFIYFCKKATLAVGNVLALRYTPEGALICNVVISDNLDNNTSRIKLPSGSIKIVSRNCWPKVRDVAMNPVEHPHGGGNHQHIGHASTVRRDAPPRQMIGLLGLKKIGRFRGHAAASAAKGDK 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi98g00023 199 Gene3D - 1 78 IPR012340 -
Vivi98g00023 199 Pfam Ribosomal Proteins L2, RNA binding domain 17 81 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vivi98g00023 199 Gene3D Ribosomal protein L2, domain 3 125 187 IPR014726 -
Vivi98g00023 199 FunFam 60S ribosomal protein L2 1 78 - -
Vivi98g00023 199 Pfam Ribosomal Proteins L2, C-terminal domain 133 167 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vivi98g00023 199 SUPERFAMILY Translation proteins SH3-like domain 91 186 IPR008991 -
Vivi98g00023 199 SMART Ribosomal_L2_2 11 82 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vivi98g00023 199 SUPERFAMILY Nucleic acid-binding proteins 2 89 IPR012340 -
Vivi98g00023 199 SMART Ribosomal_L2_C_2 88 171 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vivi98g00023 199 PANTHER RIBOSOMAL PROTEIN L2 137 187 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi98g00023 1 198 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 61.004 1.59e-100 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi98g00023 K02938 - gmx:100802137 306.99