Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi985g00002 ATGCCTGTTTCAGATTCTCCTGACGTATCAGATGATCCTTCTATTCATGATGATGAAGGCTCCGAGGAAGAAGTAGAAGAAGAGGTTGAAGAAGTAGAAGAGGAAGAAGATGAAGATCAGGAAGAGGAAGAAGAAGAGGAAGAGGTGGAAGAAGTTGAAGAGGAGGTGGAGGAAGAAGTTGAAGAAGAAGAGGAGGAGGAAGAAGTTGAGGAGGAAGAGGTTGAGGAGGAAGAGGAAACAGTAGAAGTGGAAGAGGAGGAGGAAGAAGTTGAGGAGGAGGAAGAAGTTGAGGAGGAAGAAGAAGTTGAGGAGGAGGAGGAGGAAGAAGAGATGGAAGAAATTGAAGTTGAAGTTGAAGAGGAAGAGGAAGAGGAGGAAGAACAAGAGACAATAGTAGAGGAGAAAAATGAAGGCAAACAAGTGATTCCAGTTTCTCTGCCCAATGCGAATGAGCTTAGCAAAGAAACTGTAGAGGTGGTGGTGGAGGAAGAGGAAGAGGAAGAAGAAGAGGAAGAGGAAGAGGAAGTGGAGGAGGAAGTGGAGGAAGAGGAGGTGGAGGAGGAGGAGGAAGAAGAAGAAGAAAAAGAAGAAGAAGCAATAGAGATGGAAGATGAGAAAGAACAAGAAACAGTAGTAGAGAAGAAAGATAAAGACAAGCACGGGGTTCTAGATTCTCTTCCCGATGCAGATAAACATAGCAAAGATTCAAGCCAACATATGGAGCTTGATGTGAAAGAGGAGAATTTGCAGCCAGTTTCTTCTATGCCCGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAACTTGATGTGAAAGAGAAGAATTTGCGGCCAGTTTCTTCTGTGCCCGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAAGAGAATAATGCCATGTTTTTAGCATCTGTTCTGCCGCATGAGGACTTGACATTGAAGCAAGAAGTTTCTAGTCCTCCAAAACCAAGTGAAAACTTAAATTCTGCTGAAGATGAAAAAAATCAAGACTTAAATGTTGATGTTGAAAATTCTGGATATCTTCAGAAGAAAACCTTTGGAGGAAGCAGTGAACCAGATTGCAATAGCAAAGCTTCTTTATCTGATGTTAAGGATATTGATTCTAAAGCCACCAAGTCATCTAGTAATACGGTAAAAGACGTGGTTACTGGAATCATACCGAGAGATGATTTTGTGGAGGATGCTAATGGTGGTCAGAACTCTAAGGAGAAATTTATGCAGTCAGAGACGGAGTCAAGGGTTGATGCGAAACAAAAGCCATCAAGGGCTAGAAGTCCTTCTCCCAGTGCTCAGATTACAGATGGAAACAAAAGACGTGCAGTTACATGTGCTTTTTTTGCTAAAGGTTGGTGCATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATAGCGCGGATAATGAGAAGAGAGAATTGAAATTGGAAAAAGGTGTTAAGGAAAATGTTGACTGGTCAAGAACGAATGAGAAAGAAGCAAGTCCAAGTTGGCATCCATCTCATGAAAAAGAAAAGTTTCCAATGAGGGACAGCTTGTTTCCGGAGAATCGATCTGCATTTAATACATCAAACAATTATTTCAGCTCAAATCTGACCTCGTATTCATCCCATGCAGAGGGAATGGCTGCTATTCGAAACCAACTTATGTACAGAGGAACAAAAGATTTTAGTTCGTCTTTAGGTGCAAGTGCTTTGGACTCTAAAAAGCTTTTGAATAGTGAGAAAGAATATCACGCCTATAAGTCTACTTTCTCTTCAGACCGGGAAGATTTGTATCGAGGTGGTTCATCTAGGGTTTCACCACATGCTAATGGATATAAACTAAAAACCAGTTCTTATGATTGGGAACCTTCTGTTCCATTTCGACCATCCTTTTTTATCACTTCAATGAATGTATCATCCCCTGGAGATCTGTATGACCCTCTTCGAGATAGCATTGAGATACCTAATATAGGAGACGGGTCTTTGAAAGCTTCTCTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAGGTGCGGACATATGATGATTCTGCTGCAGTTGGGAAACACATGTCCGATCTTAATGATGACAAAAGTTCGGTATCTTCCCATAATAAATTTTATGAAAATGAGCCAAACAGAAGTTCAGTTCCTCGTGGAAAAGATTCTCTTGCAACCAAAACAGAAATAACATCAGGAACTTGTGCAAACTACCAAAATGGTAGCATAGATGTGGGGCAAAATGCCTTTAGTGTTGAAGATAGGATTGAAACAACGAAAAAACGATCCAAGCATGATGCTAGGCATCACGGTGATGGATCAGAGCACAAAAATAAAAGAGTAGCAAGGGATGATAAAAATCATGAAATGGAGGTTGACTTTCAGACGGATGGCAGTAATCACAAAGAAACAAAGGCACTGAAAATTTTTCGTGCAGCCCTTGTTGATCTAGTGAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGAAGCACATATAACAATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACTTTAGAGCCACACCAAATTCCAACAAATGAAGATTCTGCTAAGCTATATATTTCTTCATGTCGGCCGAAAATTACAAAGTTAGTCCATGGATATGTCAATAAACATGGAAAATCTTGA 2679 0.4054 MPVSDSPDVSDDPSIHDDEGSEEEVEEEVEEVEEEEDEDQEEEEEEEEVEEVEEEVEEEVEEEEEEEEVEEEEVEEEEETVEVEEEEEEVEEEEEVEEEEEVEEEEEEEEMEEIEVEVEEEEEEEEEQETIVEEKNEGKQVIPVSLPNANELSKETVEVVVEEEEEEEEEEEEEEVEEEVEEEEVEEEEEEEEEKEEEAIEMEDEKEQETVVEKKDKDKHGVLDSLPDADKHSKDSSQHMELDVKEENLQPVSSMPENPEVIRSSHDMELDVKEKNLRPVSSVPENPEVIRSSHDMEENNAMFLASVLPHEDLTLKQEVSSPPKPSENLNSAEDEKNQDLNVDVENSGYLQKKTFGGSSEPDCNSKASLSDVKDIDSKATKSSSNTVKDVVTGIIPRDDFVEDANGGQNSKEKFMQSETESRVDAKQKPSRARSPSPSAQITDGNKRRAVTCAFFAKGWCIRGSSCSFLHIKDSADNEKRELKLEKGVKENVDWSRTNEKEASPSWHPSHEKEKFPMRDSLFPENRSAFNTSNNYFSSNLTSYSSHAEGMAAIRNQLMYRGTKDFSSSLGASALDSKKLLNSEKEYHAYKSTFSSDREDLYRGGSSRVSPHANGYKLKTSSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIRGSSIQASSQVRTYDDSAAVGKHMSDLNDDKSSVSSHNKFYENEPNRSSVPRGKDSLATKTEITSGTCANYQNGSIDVGQNAFSVEDRIETTKKRSKHDARHHGDGSEHKNKRVARDDKNHEMEVDFQTDGSNHKETKALKIFRAALVDLVKELLKPFWHEGRLSKEAHITIVKKSVDKVVSTLEPHQIPTNEDSAKLYISSCRPKITKLVHGYVNKHGKS 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi985g00002 892 MobiDBLite consensus disorder prediction 15 131 - -
Vivi985g00002 892 MobiDBLite consensus disorder prediction 207 246 - -
Vivi985g00002 892 MobiDBLite consensus disorder prediction 709 728 - -
Vivi985g00002 892 MobiDBLite consensus disorder prediction 772 790 - -
Vivi985g00002 892 MobiDBLite consensus disorder prediction 415 429 - -
Vivi985g00002 892 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 451 470 IPR000571 GO:0046872
Vivi985g00002 892 MobiDBLite consensus disorder prediction 158 206 - -
Vivi985g00002 892 SUPERFAMILY CCCH zinc finger 446 470 IPR036855 GO:0046872
Vivi985g00002 892 Coils Coil 15 138 - -
Vivi985g00002 892 SMART c3hfinal6 446 472 IPR000571 GO:0046872
Vivi985g00002 892 MobiDBLite consensus disorder prediction 313 443 - -
Vivi985g00002 892 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 121 549 - -
Vivi985g00002 892 MobiDBLite consensus disorder prediction 693 728 - -
Vivi985g00002 892 Coils Coil 152 212 - -
Vivi985g00002 892 MobiDBLite consensus disorder prediction 693 708 - -
Vivi985g00002 892 ProSiteProfiles Zinc finger C3H1-type profile. 446 473 IPR000571 GO:0046872
Vivi985g00002 892 MobiDBLite consensus disorder prediction 342 366 - -
Vivi985g00002 892 MobiDBLite consensus disorder prediction 761 790 - -
Vivi985g00002 892 MobiDBLite consensus disorder prediction 1 264 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi985g00002 zf-CCCH 4.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi985g00002 - - cam:101503101 950.658