Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi982g00010 ATGGTTGAACAAGAAATAAGCAGAAAAGGTCCATGGACAGAACAAGAGGATTACAAACTAGCCTATTTTGTGGGTTTATTTGGTGATCGTAGATGGGATTTTATAGCAAAGGTTTCAGGTTTGAGTCGATCAGGTAAAAGTTGCAGGTTACGTTGGGTTAACTATCTTCACCCTGATCTCAAACGTGGCAAGATGACTCCTCATGAAGAATCTCTTGTTATGGACCTTCACTCTAAATGGGGAAATAGATGGTCAAGAATTGCGAGAAAACTACCGGGAAGAACGGATAATGAGATTAAGAATTATTGGAGGACACACATGAGAAAAAAGAGAGCACAAGAGAAAAAACATGCAGCAACAAAAACACCTTCTTCAATTTCATCACCTGATCAATCTTCTAGTTGTCAATCTTCGCTGTTTTCGAACAACAATCACGCTGTGGATTCGCGCGCTTCAAACAAAGAGACCGAAGAAGAAGAAGAAGAGAATTACCAAGTTCAAGAAAGTTACTCAATGGATGATATATGGAGAGATATTGCTATGTCAGAAGAAGATGACATAAACATTCTTCAACAAACTGTTTATGATGGAACTAGGGAAGAGAATTGCAATAACTTTTGTTCTCCTATAATGCCTTCTGCATCATCATCATGGGATTATTCTAATTTAGATCCCTTGTGGGTTATGGATGAAGATGACAGCAAGATGTTGTTCCCTCCTATTGGTGATCAATGTTTCTCCTTTTATGATCAACAAGGGAACACATTTCTAACTGGTTAA 780 0.3808 MVEQEISRKGPWTEQEDYKLAYFVGLFGDRRWDFIAKVSGLSRSGKSCRLRWVNYLHPDLKRGKMTPHEESLVMDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKRAQEKKHAATKTPSSISSPDQSSSCQSSLFSNNNHAVDSRASNKETEEEEEENYQVQESYSMDDIWRDIAMSEEDDINILQQTVYDGTREENCNNFCSPIMPSASSSWDYSNLDPLWVMDEDDSKMLFPPIGDQCFSFYDQQGNTFLTG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi982g00010 259 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vivi982g00010 259 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Vivi982g00010 259 Gene3D - 9 61 - -
Vivi982g00010 259 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vivi982g00010 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 56 IPR017930 -
Vivi982g00010 259 MobiDBLite consensus disorder prediction 119 149 - -
Vivi982g00010 259 CDD SANT 64 107 IPR001005 -
Vivi982g00010 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 175 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi982g00010 259 CDD SANT 11 56 IPR001005 -
Vivi982g00010 259 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vivi982g00010 259 FunFam MYB transcription factor 64 136 - -
Vivi982g00010 259 Gene3D - 64 136 - -
Vivi982g00010 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vivi982g00010 259 FunFam Myb transcription factor 9 61 - -
Vivi982g00010 259 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Vivi982g00010 259 SMART sant 61 109 IPR001005 -
Vivi982g00010 259 SMART sant 8 58 IPR001005 -
Vivi982g00010 259 MobiDBLite consensus disorder prediction 106 168 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi982g00010 4 253 MYB Transcription Factor Family AT5G59780 55.777 8.59e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi982g00010 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi982g00010 K09422 - gmx:100776886 323.939