Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi982g00009 ATGCCAATTTCAAGAATTGCAATTGGAAGTCCTTCTGAGTTTGGCAAAGCTGATGCACTCAAAGCAGCATTAGCTGAATTCATTTCAATGCTCATATTTGTGTTTGCAGGAGAAGGCTCTGGCATGGCTTATAATAAGCTTACGGACAATGGTGCAGCAACACCAGCTGGGTTGGTGGCTGCATCACTATCACATGCTTTTGCTCTTTTTGTTGCTGTTTCCGTTGGTGCTAACATCTCTGGTGGACATGTTAACCCTGCTGTTACTTTTGGTGCATTTGTTGGTGGACATATTACTCTTGTTAGAGGTGTTTTGTATTGGATTGCGCAATTGCTTGGTTCTGTTGTTGCTTGCTTGCTCCTTAAAATTGCCACTGGTGGATTGGAAACATCTGCATTCTCATTATCTTCCGGAGTAGGAGCAACAAACGCACTTGTGTTTGAGATTGTGATGACATTTGGTTTGGTTTACACAGTGTATGCAACTGCAATAGATCCAAAGAATGGTAGTCTTGGAACAATTGCTCCAATTGCAATTGGTTTCATTGTGGGGGCCAACATTTTGGCAGGTGGGGCTTTTGATGGTGCTTCTATGAACCCAGCAGTTTCTTTTGGGCCTGCTGTTGTTAGCTGGACTTGGGCTAATCATTGGGTCTATTGGGTTGGGCCATTGATTGGTTCTGCTATTGCTGCTGTTGTTTATGAGATTTTCTTCATTACCCCTGGCTCTTATGAACAGTTACCTGTTGCAGATTATTAA 759 0.4282 MPISRIAIGSPSEFGKADALKAALAEFISMLIFVFAGEGSGMAYNKLTDNGAATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLVRGVLYWIAQLLGSVVACLLLKIATGGLETSAFSLSSGVGATNALVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWVGPLIGSAIAAVVYEIFFITPGSYEQLPVADY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi982g00009 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi982g00009 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi982g00009 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi982g00009 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi982g00009 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi982g00009 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi982g00009 252 CDD MIP 26 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi982g00009 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Vivi982g00009 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi982g00009 252 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Vivi982g00009 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Vivi982g00009 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vivi982g00009 252 SUPERFAMILY Aquaporin-like 18 241 IPR023271 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi982g00009 1 252 Major Intrinsic Protein MIP AT2G36830 79.762 1.07e-142 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi982g00009 K09873 - gmx:100777419 462.996