Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi97g00003 ATGGGAAGAAGAGGAGGAGTGTGCAAAACATGGGAGGAAGACATTTACTGGACACGCTTTCAATTCATCCGTTTCACACAATTTCTCCGTTCTGATTTTGATCAACAACTTGCACTTCCCAAAACATTTTGTGACAATATAAAGAAGGCCTTGCCAGAAAGTGTTACCCTAAAAGATCCGGGTGGAGTGCTGTGGAATATAGAGGTGACAAGTAGAGACGATACCTTGTACTTGACGCACGGTTGGCAACAATTCGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTTGATGAGAGTTTATGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTCAGCATGCAGTCAATACTGAACAAGGGGGAGGATGTGGTAGCCCGAAAAAGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCTTCTAATGCTGTTGATGAAGGTGTTTCACCCGAAAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGATATACCTATTGAAACTAACAATGGCAAGACTACTAATGTTGGTGTTGAATCCGCTTCCGCTGAGCAATTCTTGTCTGATGCAATCACTGATACTGAGCCAAAAACTACTCCGTCCAAAACAACTACTAAACGAACGAGGAGGCCTGTTTATGCCGATACATCTGTCCAGAGTAAGAAAAGAGGAAGACCACCAAAAACTGATAAGTCTGTTGAAGAAGTTAAGACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCAGAGAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGATGTACCTATTGAAACTACCAATGGCAAGACTTCTAATGTTGGTATTGAATCAGCTTCGGCCGAGCAATTCTTGTCTGATGCAATCACTGATACTGAGCCAAAAACTACTCCGTCCAAAACAACTGGTAAACGAATGAGGAGGCCTGTTTATGCCGATACATCTGTCCCAGGTAAGAAGAGAGGAAGACCACCAAAAACCGATAATTCTGTTGAAGTTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCGGAGAAATCTTTGCATCTTAACAGTATCCAAGTACCACTCGCTGTACCTATCGAAACTACTAATGGCAAGACTTCTAATGCTGGTGTTGGATCAGCTTCCGACGAGCTATTCATGTCTGATGCAGTCACTGATACTGAACCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGAACGAGGAGGCCTGTTTATGCTAATACATCTGTCCCGAGTAAGAAGAGAGGAAGACCACGAAAAACCGATAATTCTGTTGAGGAAGTTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCGGAGAAATCTTTGCATCTTAACAGTATCCAAGTACCACTCACTGTACCTATTGAAACAACTAATGGCAAGACTTCTGTTGAAGAAGTTAAGACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATCCTAACAGTATCCAAGTGCCACTTGATGTACCTATTGAAACTACCAATGGCAAGACTTCTAATGATGGTGTTGAATCAGCTTCCGACGAGCTATTCATGTCTGATGCAGTCACTGATACTGAACCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGGACGAGGAGGCCACCAAAAACTGTATATGCCGATACGTCTGTCCCTAGTAAGATGAGAGGAAGACCACCAAAAACTGTTTATGCCGATACGTCTGTCCCTAGTAAGAAGAGAGGAAGACCACCAAAAACCACTAAATCTCACGAGAGAGCTCTTAATTCCGTGTCTGGTCCTGAACTTTCTCCCAAGGTTTCTCCAAAGGCCTCTCCAAAGGTTGGATCTGGGAGCAAGCAATTATATACTTCAAATAGAAGGTCTGTCACTAAAAATGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAACATGTGCCGAAGACACCTTGCTTGTAACTATGCGACCTACGCACGTATACAAGAGATTCTTTGTGTCATTCCCTAATAAATGGAGAATAAACCATCTTTCTTCGTCGTCTCAAGATGTGATATTACGCATGGGTAAGAGGGAATGGCTTGGGAAATACCTCTATCATAATATTCGTAGCAATGGAGGAATTACCGGTGGGTGGAAACATTTTGCTCTCGAAAATAACCTTGAAGAGTTCGATGTGTGTTTGTTTAAGCCCGCTGGTCATATGGGCAAAACGTTGATCTTAGAAATGACCATTTTTAGAGTTGTAGAGGACATTACTCCTCTTACTGCGGTGAACTCTCCGGGAAAGAAGAAGTCTATTAAGAAAACACCAACCGGGGTGAATTCTCCAAGAAAAAAGAAGTCAGTTAAGAAAACACGAACTGAGATGAATTCTCCGGGAAAGAAGAGGTCAGTTAAGAAAACACCAGCAGGTGCTGTCCAAACAGAACTCGAGTCCTTTGAACCACTAGAAAAGAAGAGGGAAGTTAACATAACACCGACTAGTGCAGTCCAAACAGAACTTTACTCCATTGAAGGTGCGTAG 2586 0.4196 MGRRGGVCKTWEEDIYWTRFQFIRFTQFLRSDFDQQLALPKTFCDNIKKALPESVTLKDPGGVLWNIEVTSRDDTLYLTHGWQQFVKEHSLKENDFLVFKYNGESLFEVLIFDESLCEKAACYFVRKCQHAVNTEQGGGCGSPKKDSDNSVEEVKTPSNAVDEGVSPEKSLHLNSIRVPLDIPIETNNGKTTNVGVESASAEQFLSDAITDTEPKTTPSKTTTKRTRRPVYADTSVQSKKRGRPPKTDKSVEEVKTPSNGVDEGVSPEKSLHLNSIRVPLDVPIETTNGKTSNVGIESASAEQFLSDAITDTEPKTTPSKTTGKRMRRPVYADTSVPGKKRGRPPKTDNSVEVNTPNGVDEGVSPEKSLHLNSIQVPLAVPIETTNGKTSNAGVGSASDELFMSDAVTDTEPKTVPSQTTGKRTRRPVYANTSVPSKKRGRPRKTDNSVEEVNTPNGVDEGVSPEKSLHLNSIQVPLTVPIETTNGKTSVEEVKTPSNGVDEGVSPEKSLHPNSIQVPLDVPIETTNGKTSNDGVESASDELFMSDAVTDTEPKTVPSQTTGKRTRRPPKTVYADTSVPSKMRGRPPKTVYADTSVPSKKRGRPPKTTKSHERALNSVSGPELSPKVSPKASPKVGSGSKQLYTSNRRSVTKNEIENTLQLAQATCAEDTLLVTMRPTHVYKRFFVSFPNKWRINHLSSSSQDVILRMGKREWLGKYLYHNIRSNGGITGGWKHFALENNLEEFDVCLFKPAGHMGKTLILEMTIFRVVEDITPLTAVNSPGKKKSIKKTPTGVNSPRKKKSVKKTRTEMNSPGKKRSVKKTPAGAVQTELESFEPLEKKREVNITPTSAVQTELYSIEGA 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi97g00003 861 SMART AT_hook_2 436 448 IPR017956 GO:0003677
Vivi97g00003 861 SMART AT_hook_2 338 350 IPR017956 GO:0003677
Vivi97g00003 861 SMART AT_hook_2 238 250 IPR017956 GO:0003677
Vivi97g00003 861 SMART AT_hook_2 580 592 IPR017956 GO:0003677
Vivi97g00003 861 SMART AT_hook_2 598 610 IPR017956 GO:0003677
Vivi97g00003 861 PRINTS AT-hook-like domain signature 238 248 IPR017956 GO:0003677
Vivi97g00003 861 PRINTS AT-hook-like domain signature 336 347 IPR017956 GO:0003677
Vivi97g00003 861 PRINTS AT-hook-like domain signature 434 444 IPR017956 GO:0003677
Vivi97g00003 861 MobiDBLite consensus disorder prediction 205 270 - -
Vivi97g00003 861 MobiDBLite consensus disorder prediction 239 256 - -
Vivi97g00003 861 SMART B3_2 671 769 IPR003340 GO:0003677
Vivi97g00003 861 SMART B3_2 25 115 IPR003340 GO:0003677
Vivi97g00003 861 MobiDBLite consensus disorder prediction 305 319 - -
Vivi97g00003 861 ProSiteProfiles B3 DNA-binding domain profile. 671 769 IPR003340 GO:0003677
Vivi97g00003 861 Gene3D - 649 771 IPR015300 -
Vivi97g00003 861 MobiDBLite consensus disorder prediction 483 641 - -
Vivi97g00003 861 MobiDBLite consensus disorder prediction 410 431 - -
Vivi97g00003 861 Pfam AT hook motif 437 447 IPR017956 GO:0003677
Vivi97g00003 861 Pfam AT hook motif 599 609 IPR017956 GO:0003677
Vivi97g00003 861 Pfam AT hook motif 239 249 IPR017956 GO:0003677
Vivi97g00003 861 Pfam AT hook motif 338 349 IPR017956 GO:0003677
Vivi97g00003 861 Pfam AT hook motif 582 589 IPR017956 GO:0003677
Vivi97g00003 861 MobiDBLite consensus disorder prediction 205 233 - -
Vivi97g00003 861 MobiDBLite consensus disorder prediction 135 170 - -
Vivi97g00003 861 MobiDBLite consensus disorder prediction 519 538 - -
Vivi97g00003 861 SUPERFAMILY DNA-binding pseudobarrel domain 24 117 IPR015300 -
Vivi97g00003 861 MobiDBLite consensus disorder prediction 779 833 - -
Vivi97g00003 861 SUPERFAMILY DNA-binding pseudobarrel domain 672 759 IPR015300 -
Vivi97g00003 861 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Vivi97g00003 861 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 772 IPR044837 -
Vivi97g00003 861 MobiDBLite consensus disorder prediction 779 793 - -
Vivi97g00003 861 CDD B3_DNA 25 113 IPR003340 GO:0003677
Vivi97g00003 861 MobiDBLite consensus disorder prediction 404 464 - -
Vivi97g00003 861 MobiDBLite consensus disorder prediction 305 365 - -
Vivi97g00003 861 CDD B3_DNA 674 767 IPR003340 GO:0003677
Vivi97g00003 861 Gene3D - 19 117 IPR015300 -
Vivi97g00003 861 MobiDBLite consensus disorder prediction 551 566 - -
Vivi97g00003 861 Pfam B3 DNA binding domain 673 761 IPR003340 GO:0003677
Vivi97g00003 861 Pfam B3 DNA binding domain 35 114 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi97g00003 625 767 REM Transcription Factor Family AT4G33280 30.818 8.44e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi97g00003 B3 2.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi97g00003 - - vvo:131624229 1701.03