Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi97g00002 ATGCTCTCTTTCTTTAGCAACACAAGTGTTTTTCCTGATATAGGGGTTCTGTTTAAGATGGGAAGAAGAGGAGGAGTGTGCAAAACATGGGAGGAAGACATTTACTGGACACGCTTTCAATTCATCCGTTTCACACAATTTCTCCGTTCTGATTTTGATCAACAACTTGCACTTCCCAAAACATTTTGTGACAATATAAAGAAGGCCTTGCCAGAAAGTGTTACCCTAAAAGATCCGGGTGGAGTGCTGTGGAATATAGAGGTGACAAGTAGAGACGATACCTTGTACTTGACGCACGGTTGGCAACAATTCGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTTGATGAGAGTTTATGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTCAGCATGCAGTCAATACTGAACAAGGGGGAGGATGTGGTAGCCCGAAAAAGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCTTCTAATGCTGTTGATGAAGGTGTTTCACCCGAAAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGATATACCTATTGAAACTAACAATGGCAAGACTACTAATGTTGGTGTTGAATCCGCTTCCGCTGAGCAATTCTTGTCTGATGCAATCACTGATACTGAGCCAAAAACTACTCCGTCCAAAACAACTACTAAACGAACGAGGAGGCCTGTTTATGCCGATACATCTGTCCAGAGTAAGAAAAGAGGAAGACCACCAAAAACTGATAAGTCTGTTGAAGAAGTTAAGACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCAGAGAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGATGTACCTATTGAAACTACCAATGGCAAGACTTCTAATGTTGGTATTGAATCAGCTTCGGCCGAGCAATTCTTGTCTGATGCAATCACTGATACTGAGCCAAAAACTACTCCGTCCAAAACAACTGGTAAACGAATGAGGAGGCCTGTTTATGCCGATACATCTGTCCCAGGTAAGAAGAGAGGAAGACCACCAAAAACCGATAATTCTGTTGAAGTTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCGGAGAAATCTTTGCATCTTAACAGTATCCAAGTACCACTCGCTGTACCTATCGAAACTACTAATGGCAAGACTTCTAATGCTGGTGTTGGATCAGCTTCCGACGAGCTATTCATGTCTGATGCAGTCACTGATACTGAACCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGAACGAGGAGGCCTGTTTATGCTAATACATCTGTCCCGAGTAAGAAGAGAGGAAGACCACGAAAAACCGATAATTCTGTTGAGGAAGTTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCGGAGAAATCTTTGCATCTTAACAGTATCCAAGTACCACTCACTGTACCTATTGAAACAACTAATGGCAAGACTTCTGTTGAAGAAGTTAAGACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATCCTAACAGTATCCAAGTGCCACTTGATGTACCTATTGAAACTACCAATGGCAAGACTTCTAATGATGGTGTTGAATCAGCTTCCGACGAGCTATTCATGTCTGATGCAGTCACTGATACTGAACCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGGACGAGGAGGCCACCAAAAACTGTATATGCCGATACGTCTGTCCCTAGTAAGATGAGAGGAAGACCACCAAAAACTGTTTATGCCGATACGTCTGTCCCTAGTAAGAAGAGAGGAAGACCACCAAAAACCACTAAATCTCACGAGAGAGCTCTTAATTCCGTGTCTGGTCCTGAACTTTCTCCCAAGGTTTCTCCAAAGGCCTCTCCAAAGGTTGGATCTGGGAGCAAGCAATTATATACTTCAAATAGAAGGTCTGTCACTAAAAATGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAACATGTGCCGAAGACACCTTGCTTGTAACTATGCGACCTACGCACGTATACAAGAGATTCTTTGTGGTGAATCATTCCCTAATAAATGGAGAATAA 2145 0.4177 MLSFFSNTSVFPDIGVLFKMGRRGGVCKTWEEDIYWTRFQFIRFTQFLRSDFDQQLALPKTFCDNIKKALPESVTLKDPGGVLWNIEVTSRDDTLYLTHGWQQFVKEHSLKENDFLVFKYNGESLFEVLIFDESLCEKAACYFVRKCQHAVNTEQGGGCGSPKKDSDNSVEEVKTPSNAVDEGVSPEKSLHLNSIRVPLDIPIETNNGKTTNVGVESASAEQFLSDAITDTEPKTTPSKTTTKRTRRPVYADTSVQSKKRGRPPKTDKSVEEVKTPSNGVDEGVSPEKSLHLNSIRVPLDVPIETTNGKTSNVGIESASAEQFLSDAITDTEPKTTPSKTTGKRMRRPVYADTSVPGKKRGRPPKTDNSVEVNTPNGVDEGVSPEKSLHLNSIQVPLAVPIETTNGKTSNAGVGSASDELFMSDAVTDTEPKTVPSQTTGKRTRRPVYANTSVPSKKRGRPRKTDNSVEEVNTPNGVDEGVSPEKSLHLNSIQVPLTVPIETTNGKTSVEEVKTPSNGVDEGVSPEKSLHPNSIQVPLDVPIETTNGKTSNDGVESASDELFMSDAVTDTEPKTVPSQTTGKRTRRPPKTVYADTSVPSKMRGRPPKTVYADTSVPSKKRGRPPKTTKSHERALNSVSGPELSPKVSPKASPKVGSGSKQLYTSNRRSVTKNEIENTLQLAQATCAEDTLLVTMRPTHVYKRFFVVNHSLINGE 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi97g00002 714 MobiDBLite consensus disorder prediction 502 660 - -
Vivi97g00002 714 CDD B3_DNA 44 132 IPR003340 GO:0003677
Vivi97g00002 714 Pfam AT hook motif 258 268 IPR017956 GO:0003677
Vivi97g00002 714 Pfam AT hook motif 456 466 IPR017956 GO:0003677
Vivi97g00002 714 Pfam AT hook motif 618 628 IPR017956 GO:0003677
Vivi97g00002 714 Pfam AT hook motif 357 368 IPR017956 GO:0003677
Vivi97g00002 714 Pfam AT hook motif 601 608 IPR017956 GO:0003677
Vivi97g00002 714 Pfam B3 DNA binding domain 54 133 IPR003340 GO:0003677
Vivi97g00002 714 MobiDBLite consensus disorder prediction 570 585 - -
Vivi97g00002 714 SUPERFAMILY DNA-binding pseudobarrel domain 43 136 IPR015300 -
Vivi97g00002 714 Gene3D - 38 136 IPR015300 -
Vivi97g00002 714 SMART AT_hook_2 617 629 IPR017956 GO:0003677
Vivi97g00002 714 SMART AT_hook_2 599 611 IPR017956 GO:0003677
Vivi97g00002 714 SMART AT_hook_2 357 369 IPR017956 GO:0003677
Vivi97g00002 714 SMART AT_hook_2 455 467 IPR017956 GO:0003677
Vivi97g00002 714 SMART AT_hook_2 257 269 IPR017956 GO:0003677
Vivi97g00002 714 MobiDBLite consensus disorder prediction 324 338 - -
Vivi97g00002 714 PRINTS AT-hook-like domain signature 453 463 IPR017956 GO:0003677
Vivi97g00002 714 PRINTS AT-hook-like domain signature 257 267 IPR017956 GO:0003677
Vivi97g00002 714 PRINTS AT-hook-like domain signature 355 366 IPR017956 GO:0003677
Vivi97g00002 714 PANTHER B3 DOMAIN-CONTAINING 49 256 - -
Vivi97g00002 714 MobiDBLite consensus disorder prediction 258 275 - -
Vivi97g00002 714 MobiDBLite consensus disorder prediction 423 483 - -
Vivi97g00002 714 MobiDBLite consensus disorder prediction 224 289 - -
Vivi97g00002 714 MobiDBLite consensus disorder prediction 224 252 - -
Vivi97g00002 714 SMART B3_2 44 134 IPR003340 GO:0003677
Vivi97g00002 714 ProSiteProfiles B3 DNA-binding domain profile. 41 134 IPR003340 GO:0003677
Vivi97g00002 714 MobiDBLite consensus disorder prediction 324 384 - -
Vivi97g00002 714 MobiDBLite consensus disorder prediction 538 557 - -
Vivi97g00002 714 MobiDBLite consensus disorder prediction 429 450 - -
Vivi97g00002 714 MobiDBLite consensus disorder prediction 154 187 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi97g00002 27 154 REM Transcription Factor Family AT4G33280 51.538 4.78e-38 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi97g00002 B3 6.3e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi97g00002 - - vvo:131624229 1387.09