Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi97g00001 ATGCTCTCTTTCTTTAGCAACACAAGTGTTTTTCCTGATATAGGGGTTCTGTTTAAGATGGGAAGAAGAGGAGGAGTGTGCAAAACATGGGAGGAAGACATTTACTGGACACGCTTTCAATTCATCCGTTTCACACAATTTCTCCGTTCTGATTTTGATCAACAACTTGCACTTCCCAAAACATTTTGTGACAATATAAAGAAGGCCTTGCCAGAAAGTGTTACCCTAAAAGATCCGGGTGGAGTGCTGTGGAATATAGAGGTGACAAGTAGAGACGATACCTTGTACTTGACGCACGGTTGGCAACAATTCGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTTGATGAGAGTTTATGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTCAGCATGCAGTCAATACTGAACAAGGGGGAGGATGTGGTAGCCCGAAAAAGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCTTCTAATGCTGTTGATGAAGGTGTTTCACCCGAAAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGATATACCTATTGAAACTAACAATGGCAAGACTACTAATGTTGGTGTTGAATCCGCTTCCGCTGAGCAATTCTTGTCTGATGCAATCACTGATACTGAGCCAAAAACTACTCCGTCCAAAACAACTACTAAACGAACGAGGAGGCCTGTTTATGCCGATACATCTGTCCAGAGTAAGAAAAGAGGAAGACCACCAAAAACTGATAAGTCTGTTGAAGAAGTTAAGACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCAGAGAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGATGTACCTATTGAAACTACCAATGGCAAGACTTCTAATGTTGGTATTGAATCAGCTTCGGCCGAGCAATTCTTGTCTGATGCAATCACTGATACTGAGCCAAAAACTACTCCGTCCAAAACAACTGGTAAACGAATGAGGAGGCCTGTTTATGCCGATACATCTGTCCCAGGTAAGAAGAGAGGAAGACCACCAAAAACCGATAATTCTGTTGAAGTTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCGGAGAAATCTTTGCATCTTAACAGTATCCAAGTACCACTCGCTGTACCTATCGAAACTACTAATGGCAAGACTTCTAATGCTGGTGTTGGATCAGCTTCCGACGAGCTATTCATGTCTGATGCAGTCACTGATACTGAACCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGAACGAGGAGGCCTGTTTATGCTAATACATCTGTCCCGAGTAAGAAGAGAGGAAGACCACGAAAAACCGATAATTCTGTTGAGGAAGTTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCGGAGAAATCTTTGCATCTTAACAGTATCCAAGTACCACTCACTGTACCTATTGAAACAACTAATGGCAAGACTTCTGTTGAAGAAGTTAAGACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATCCTAACAGTATCCAAGTGCCACTTGATGTACCTATTGAAACTACCAATGGCAAGACTTCTAATGATGGTGTTGAATCAGCTTCCGACGAGCTATTCATGTCTGATGCAGTCACTGATACTGAACCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGGACGAGGAGGCCACCAAAAACTGTATATGCCGATACGTCTGTCCCTAGTAAGATGAGAGGAAGACCACCAAAAACTGTTTATGCCGATACGTCTGTCCCTAGTAAGAAGAGAGGAAGACCACCAAAAACCACTAAATCTCACGAGAGAGCTCTTAATTCCGTGTCTGGTCCTGAACTTTCTCCCAAGGTTTCTCCAAAGGCCTCTCCAAAGGTTGGATCTGGGAGCAAGCAATTATATACTTCAAATAGAAGGTCTGTCACTAAAAATGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAACATGTGCCGAAGACACCTTGCTTGTAACTATGCGACCTACGCACGTATACAAGAGATTCTTTGTGTCATTCCCTAATAAATGGAGAATAAACCATCTTTCTTCGTCGTCTCAAGATGTGATATTACGCATGGGTAAGAGGGAATGGCTTGGGAAATACCTCTATCATAATATTCGTAGCAATGGAGGAATTACCGGTGGGTGGAAACATTTTGCTCTCGAAAATAACCTTGAAGAGTTCGATGTGTGTTTGTTTAAGCCCGCTGGTCATATGGGCAAAACGTTGATCTTAGAAATGACCATTTTTAGAGTTGTAGAGGACATTACTCCTCTTACTGCGGTGAACTCTCCGGGAAAGAAGAAGTCTATTAAGAAAACACCAACCGGGGTGAATTCTCCAAGAAAAAAGAAGTCAGTTAAGAAAACACGAACTGAGATGAATTCTCCGGGAAAGAAGAGGTCAGTTAAGAAAACACCAGCAGGTGCTGTCCAAACAGAACTCGAGTCCTTTGAACCACTAGAAAAGAAGAGGGAAGTTAACATAACACCGACTAGTGCAGTCCAAACAGAACTTTACTCCATTGAAGGTGCGTAG 2643 0.4185 MLSFFSNTSVFPDIGVLFKMGRRGGVCKTWEEDIYWTRFQFIRFTQFLRSDFDQQLALPKTFCDNIKKALPESVTLKDPGGVLWNIEVTSRDDTLYLTHGWQQFVKEHSLKENDFLVFKYNGESLFEVLIFDESLCEKAACYFVRKCQHAVNTEQGGGCGSPKKDSDNSVEEVKTPSNAVDEGVSPEKSLHLNSIRVPLDIPIETNNGKTTNVGVESASAEQFLSDAITDTEPKTTPSKTTTKRTRRPVYADTSVQSKKRGRPPKTDKSVEEVKTPSNGVDEGVSPEKSLHLNSIRVPLDVPIETTNGKTSNVGIESASAEQFLSDAITDTEPKTTPSKTTGKRMRRPVYADTSVPGKKRGRPPKTDNSVEVNTPNGVDEGVSPEKSLHLNSIQVPLAVPIETTNGKTSNAGVGSASDELFMSDAVTDTEPKTVPSQTTGKRTRRPVYANTSVPSKKRGRPRKTDNSVEEVNTPNGVDEGVSPEKSLHLNSIQVPLTVPIETTNGKTSVEEVKTPSNGVDEGVSPEKSLHPNSIQVPLDVPIETTNGKTSNDGVESASDELFMSDAVTDTEPKTVPSQTTGKRTRRPPKTVYADTSVPSKMRGRPPKTVYADTSVPSKKRGRPPKTTKSHERALNSVSGPELSPKVSPKASPKVGSGSKQLYTSNRRSVTKNEIENTLQLAQATCAEDTLLVTMRPTHVYKRFFVSFPNKWRINHLSSSSQDVILRMGKREWLGKYLYHNIRSNGGITGGWKHFALENNLEEFDVCLFKPAGHMGKTLILEMTIFRVVEDITPLTAVNSPGKKKSIKKTPTGVNSPRKKKSVKKTRTEMNSPGKKRSVKKTPAGAVQTELESFEPLEKKREVNITPTSAVQTELYSIEGA 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi97g00001 880 CDD B3_DNA 44 132 IPR003340 GO:0003677
Vivi97g00001 880 MobiDBLite consensus disorder prediction 570 585 - -
Vivi97g00001 880 PRINTS AT-hook-like domain signature 453 463 IPR017956 GO:0003677
Vivi97g00001 880 PRINTS AT-hook-like domain signature 257 267 IPR017956 GO:0003677
Vivi97g00001 880 PRINTS AT-hook-like domain signature 355 366 IPR017956 GO:0003677
Vivi97g00001 880 Pfam B3 DNA binding domain 692 780 IPR003340 GO:0003677
Vivi97g00001 880 Pfam B3 DNA binding domain 54 133 IPR003340 GO:0003677
Vivi97g00001 880 Gene3D - 668 790 IPR015300 -
Vivi97g00001 880 MobiDBLite consensus disorder prediction 258 275 - -
Vivi97g00001 880 MobiDBLite consensus disorder prediction 224 289 - -
Vivi97g00001 880 MobiDBLite consensus disorder prediction 423 483 - -
Vivi97g00001 880 Gene3D - 38 136 IPR015300 -
Vivi97g00001 880 ProSiteProfiles B3 DNA-binding domain profile. 41 134 IPR003340 GO:0003677
Vivi97g00001 880 MobiDBLite consensus disorder prediction 429 450 - -
Vivi97g00001 880 ProSiteProfiles B3 DNA-binding domain profile. 690 788 IPR003340 GO:0003677
Vivi97g00001 880 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 49 791 IPR044837 -
Vivi97g00001 880 MobiDBLite consensus disorder prediction 502 660 - -
Vivi97g00001 880 MobiDBLite consensus disorder prediction 798 852 - -
Vivi97g00001 880 SUPERFAMILY DNA-binding pseudobarrel domain 43 136 IPR015300 -
Vivi97g00001 880 SMART AT_hook_2 617 629 IPR017956 GO:0003677
Vivi97g00001 880 SMART AT_hook_2 599 611 IPR017956 GO:0003677
Vivi97g00001 880 SMART AT_hook_2 357 369 IPR017956 GO:0003677
Vivi97g00001 880 SMART AT_hook_2 455 467 IPR017956 GO:0003677
Vivi97g00001 880 SMART AT_hook_2 257 269 IPR017956 GO:0003677
Vivi97g00001 880 MobiDBLite consensus disorder prediction 324 338 - -
Vivi97g00001 880 SUPERFAMILY DNA-binding pseudobarrel domain 691 778 IPR015300 -
Vivi97g00001 880 MobiDBLite consensus disorder prediction 798 812 - -
Vivi97g00001 880 SMART B3_2 44 134 IPR003340 GO:0003677
Vivi97g00001 880 SMART B3_2 690 788 IPR003340 GO:0003677
Vivi97g00001 880 MobiDBLite consensus disorder prediction 224 252 - -
Vivi97g00001 880 Pfam AT hook motif 258 268 IPR017956 GO:0003677
Vivi97g00001 880 Pfam AT hook motif 601 608 IPR017956 GO:0003677
Vivi97g00001 880 Pfam AT hook motif 456 466 IPR017956 GO:0003677
Vivi97g00001 880 Pfam AT hook motif 618 628 IPR017956 GO:0003677
Vivi97g00001 880 Pfam AT hook motif 357 368 IPR017956 GO:0003677
Vivi97g00001 880 MobiDBLite consensus disorder prediction 538 557 - -
Vivi97g00001 880 MobiDBLite consensus disorder prediction 324 384 - -
Vivi97g00001 880 CDD B3_DNA 693 786 IPR003340 GO:0003677
Vivi97g00001 880 MobiDBLite consensus disorder prediction 154 187 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi97g00001 644 786 REM Transcription Factor Family AT4G33280 30.818 8.03e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi97g00001 B3 2.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi97g00001 - - vvo:131624229 1738.01