Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi978g00007 ATGGCTGAGGTGAAATCAGAGGAGTATTGTTTGGAGAATAAGCAATCAACTGTTGCTTCTTGCTCCTCTGCGTCTGAAGGCAGTGGCAGTGGCAGTGTAGTTCATAAGTCTCCAGGGATATGTAGCCCACCGTCGCCCTCACATCGGAGGACAACCGGTCCTATAAGGCGTGCCAAGGGTGGTTGGACAGCAGAGGAGGATGAGACATTAAGGAATGCTGTTGCAGCTTTTAATGGAAAGCATTGGAAGAAAATAGCCGAGTTTTTTCCTGATAGATCAGAAGTTCAATGTCTGCACAGATGGCAAAAGGTTCTCAATCCAGATCTTGTTAAAGGACCATGGACACAGGAGGAGGATGATAAAATAGTTGAACTGGTGTCAAAATACGGCCCTACAAAATGGTCCTTGATTGCCAAGTCTTTGCCTGGTCGAATAGGGAAACAGTGTCGAGAGAGGTGGCACAATCATCTTAATCCTGGAATAAAGAAGGATGCTTGGACTTTAGAAGAGGAACTAGCCTTGATGAATGCTCATCATATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCATTGGAATAGTTCTTTGAAGAAGAAGTTGGACTTTTACTTAGCCACAGGAAAACTTCCACCAGTTCCTAAAAACAATCCAATATATGCTGCCAAAGATACACTTAGACGTTCTACTACTAAAACACTACCTGTTTCATCTAATATAGAATTAAATGTAGCTGTTGAAACATCCTCTGAAACTACAGCCATTAGTAAGCATGATGACAGTGGCAAGAATCAGTTTGAGTCTTCAGGGACAGTTAGAGAAGTTGGTGACTCTTCAAGTGTCCCAGGAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGCCTGGACCATCCAATGTTGATCTTAACTGTGGAAACTCAGAACGTATATCAAGAGGTAATTTTGGAACAACTTATGAGCCAAATAATGAGAATTCCGCACTCAATGGAAACTTAATAACTCGGCATTGTTTAAGCAATGGTAAAATGAGCAATAGTAGTAGCAGGTTAATCAGGACATCCGCTCAAGAAAATCAGAATTGCGGTTCTTTGTGTTACGAGCCACCAGTTTTAGCTGGTTCAGTTCCTTTAGATTCTCTTCATTTAAGTATCCTCTGCATGCAGAATGATTACAGTTCTAAGTTGCCATCCATGGGTTTCATCACTCCACCTCGTGCGAGGGATAGTGAATTATGTACGGAGACCCCTGAATCAATATTGAGAAAGGCTGCTGATACTTATCCAAATACTCCCTCCATATATAGGCGTAGAAGAACTGGGGTCCAACTACTCACTTCTCCTAGTAAAGTTTTAAAAGTCAATGTTGATTCACATGCTTCAAATGAACCAGATAGAACCAAGAATAATTCTGGTTCTGAAGCTCGGGTGTTGTCCAAGAGTCCCGCAAGCCGTGACAATAATAGTGTTATTCTTGATAATAAGGCATTCAATGCATCTCCACCATACCGGTTAAGAACCAAACGAACAGCAGTAGTCAAATCTGTGGAGAAACAACTTGAGTTTGCGTTTGATAAAGAGAAGAATGATGATTGTCTGCATGAAAGAAAATTGGTAGTGACATAG 1659 0.4141 MAEVKSEEYCLENKQSTVASCSSASEGSGSGSVVHKSPGICSPPSPSHRRTTGPIRRAKGGWTAEEDETLRNAVAAFNGKHWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPGIKKDAWTLEEELALMNAHHIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPVPKNNPIYAAKDTLRRSTTKTLPVSSNIELNVAVETSSETTAISKHDDSGKNQFESSGTVREVGDSSSVPGNESADSDCVECKPGPSNVDLNCGNSERISRGNFGTTYEPNNENSALNGNLITRHCLSNGKMSNSSSRLIRTSAQENQNCGSLCYEPPVLAGSVPLDSLHLSILCMQNDYSSKLPSMGFITPPRARDSELCTETPESILRKAADTYPNTPSIYRRRRTGVQLLTSPSKVLKVNVDSHASNEPDRTKNNSGSEARVLSKSPASRDNNSVILDNKAFNASPPYRLRTKRTAVVKSVEKQLEFAFDKEKNDDCLHERKLVVT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi978g00007 552 SMART sant 58 107 IPR001005 -
Vivi978g00007 552 SMART sant 162 210 IPR001005 -
Vivi978g00007 552 SMART sant 110 159 IPR001005 -
Vivi978g00007 552 FunFam Transcriptional activator Myb isoform A 58 110 - -
Vivi978g00007 552 Gene3D - 58 110 - -
Vivi978g00007 552 CDD SANT 113 157 IPR001005 -
Vivi978g00007 552 MobiDBLite consensus disorder prediction 276 297 - -
Vivi978g00007 552 MobiDBLite consensus disorder prediction 469 500 - -
Vivi978g00007 552 FunFam Transcription factor MYB3R-2 164 228 - -
Vivi978g00007 552 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Vivi978g00007 552 Gene3D - 164 229 - -
Vivi978g00007 552 CDD SANT 62 105 IPR001005 -
Vivi978g00007 552 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Vivi978g00007 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Vivi978g00007 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Vivi978g00007 552 MobiDBLite consensus disorder prediction 476 500 - -
Vivi978g00007 552 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Vivi978g00007 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Vivi978g00007 552 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Vivi978g00007 552 FunFam Transcriptional activator Myb isoform A 111 163 - -
Vivi978g00007 552 MobiDBLite consensus disorder prediction 259 304 - -
Vivi978g00007 552 PANTHER MYB PROTEIN-RELATED 59 131 - -
Vivi978g00007 552 MobiDBLite consensus disorder prediction 11 32 - -
Vivi978g00007 552 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Vivi978g00007 552 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Vivi978g00007 552 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Vivi978g00007 552 Gene3D - 111 162 - -
Vivi978g00007 552 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Vivi978g00007 552 MobiDBLite consensus disorder prediction 1 55 - -
Vivi978g00007 552 CDD SANT 165 208 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi978g00007 2 542 MYB Transcription Factor Family AT3G09370 48.101 1.63e-144 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi978g00007 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi978g00007 K09422 - gmx:100793280 827.394