Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi973g00009 ATGGATATCCCTTCCATGATAACTCCTGTAGCTCAAATTTGTGGTGGCAAAATTGAAATTAATTTGAAGGTTAGAGTAATTCATCTTTGGATTATACCGGATCGCATAAATTCAGCAGAGAATGGAACTCTCCATATGCTCTTATTGGATGAAAAGTGTGGAAAAATTCATGCAACAATTCGAAAAAATCTCATGCCACAATTTAAGGATAAAATTTTAGAAGGTTCTACGTATGTTTTTGAAAAATTTTTGGTTGCTCTGAATGATGTTTCATTCAGAACCACAAACCATAAGTATAAGCTCAATTTTATGGGATCTACAAATTTATTCAAAGTGAATGCCCCGGAGATACCTCTTCATCATTTTGAATTTATGTCATTTCTTGATATCCTGTCTTCAACAAAAGAGGATAAATTACTCGATATTATTGGCCATGTCGTAGAGAAAAACAATATCAAAGAAATCGAAAAAAATGGCACCAAAGTTATGGATATTACACTTGAAGATTTGGATAACAATAGAATTCATTGTACTTTATGGAGTGAATTTGCTGAAATGATGGAACAATTTTTGGAAAAACATGACTCTTCACACAGTGTCATCATCATACTGCAAATCTGCAAGTTGAAGAAGTATTACGGCAAAATGGGTGTGTCTAACTCATTTTTTGGAACAAAAATGTTTTTGAATACTGATATACCTGCTATTAACGACTATAAATTGAGGATGACTGAGGAAAATGTGGATTTGACTCAAGGTGTTAGTCAAATGATCGGACCAACCATAATTCCATTGGCAGATGATTTACTCCAAACCAAAAAAATGACTATTGAAGATTTGATTGAATCTACAGAAAAATGTTTTGGCTCTGTCTTAGTAAGAACATGTGAGCTTGATACTGATGCAGGATGGTTCTATCAAGCATGCTCCAAATGTGCCTCAAAAATTAATATAATTGAAGGAAAGCTATATTGTGACAGATGCAAGATGCCAAAAACTGCCGTTCCTAGGTTTAAGGTTCATATACAAGTCATAGATAAGACCGGATCAACAACTTTTATTTTGTTTGATCGCATTGTGTCTCAAGTGCTGGGCAGAAATGTACAAGATCTGCTTGATTCTATGGGTCAGGGGAGTAATGCTAATGCTTATCCATCAGACTTGGATACATTTCTGGACAAACAAATATTATTCAAAGTTGAAGTTAGTGATGGAAACATATTTCAAAATTGGCGTAGCTATACTGTCAAAAAACTTACCGAAGACACTGATATAATCAAACAATTCATATCCATTAATGGGATTAAGATAACTAATAATGAAGAGAAAGCTGAACATGTCGAAGAAGTAACTAGACTTGCTGATGAGAAACCGGTGGAGATTATTGAAAGGGGTAATTCAAAGACCGAAAATGAAGTTGTGGTACTTGGAAAGAGAAAGGATCGAAGTTTAGAATCATTAGACACAATTGATCTCGAGGAAAAGCAACTTGGAGTGGCAGAAATTCAACGTCTCAATCGACTCAAAAGGAAGCAACAACTTGATTTGAAACAAAATCAACATGGAAAAAATAAGGAAGAAAGTCAACGTCTCAATCAGCTCAAAAGGAAGCAACAACTTTCAGACATTGATTCTTTTATTGAAAATCATAATGAGTACAACAACATGGTACCCATCACAAATGGAGAAGAATCAGATATACCTTCTAATTCAGAAAAGCAACATGGAGAAAATGATGCAGAAATTCAACGTTTCAATCGGCTCAAAAGGAAGCAACAACTTGATTGGAAACAAATTGATTCTTCTATTGAAAATCATAATGAATACAACAACAGGGTATCCATCACAAATGGAGAAGAGTCGGATATATCTTCTAATTCAGAAAAGCAACATGGAGAAAATGATGCAGAAATTCAACGTTTCAATCGGCTCAAAAGGAAGCAACAACTTGATTTGAAACAAATTGATTCTTCTATTGAAAATCATAATGAGTACAACAACATGGTATCCATCACAAATGGAGAAGAGTCGGATATACCTTCTAATTCAGACATTATGTCAATGGTGGAAAATGACAATGAGTTAAACACCATGGTATGCATGACAAATGGAGAAGAGTCAAATGTACCTTCTAATTCAGGGATTCAATTTCCGTTACAAATTGACAATGAACAATTAGATGATACTGCTAAGTCAGATTCGCAATATTTAAATATGGGTCACCCAATATGTGTTTGTGAATTCTGTGGTGCATTGATGTGGTATGAAGAACGCGTTCAAAAACAGTATAGACCACTGACACCAAAATTTTCAATGTGTTGCATGCAAGGCAAGATTGTAATTGCTCCATACCCCAGTCTTCCTCAATCTTTGCATGATTTGTATCACAAACATGACAGAAGGAGTAAATTCTTTTTGGAAAATATTAGATCTTTCAATAGTATGTTTGCTTTCACCTCTATGGGAGGAAAAATAAATAAGGAAATAAATAATGGTAATGCACCACCAATATTTGTGATGAATGGTGAAAACTTTCATCAAATTGGAAGTTTGTTGCCTTTACCAGGGAACCAACCAAAATTTTCTCAACTATACATCTACGACACTGATAATGAAATAACTAACAGAATGGCCGTTGTCAGAATGGATGGTGAAGACTTTGAGTTGAAATCAACAATTGTTAGCGATATAAGGGAAGTTCTTGATAATTTCAATCCCTATGTCAAAACATATAGAATAATTCGAGACACCATAACAAAACAAAATGCTCCAACTATGAAGTTAAGAATATTAAGAAAGAGAGGTTGTGATGGTCGACGATACAATCTTCCAACAGCTTCAGAGGTGGCAGCATTGGTCGTTGGTGATTTTGATTCAGTAGACTTTGATAGGGATGTTGTTGTTGAGACTCAATCTGGATTGTTGCAACGTATTTCTGTATTTGAGCCAGCATATTTACCATTACAATATCCACTTCTATTTCCTAGAGGAGAAGACGGGTTTCGAAAAGATATTCCATATAATGAAGATACTAATACGTCCACTTCAAAAAGGAAGTTTGTCACACAAAAAGAATGGGTTGCCTACAAAATTCAACAAAGAGATACAAATACGTCAACATTATTGTTTTCTAAAAGATTATTTCAACAATTTTTGGTGGATTCATTTAGTGCAATAGAGTCTTCGCGCTTGAAGTGGATTAGAGATCATCAAAAAGACTTAAGAGCAGAAATCTACAAGGGGTTAACCGAGGCCATTCTTAGAGGAGAGACTAATCCAACTTCATCAGGAAAAAGAATTGTGTTGCCGTCTACATTTGTTGGTGGAGCAAGATATATGATACAAAATTATCAGGATGCCATGGCAATTTGTGGTTGGACAGGATATCCTGACTTATTTATCACTTTCACATGTAACCATAAATGGCCTGAATTGGTTGATTTTTTGAAAACATATCACCTAAATCCAGAGGATAGGCCCGATTTAGTGAGTCGACTTTTCAAAATTAAACTTGATCAGTTAATAAAAGACATCAAGAAAGGCACTATTTTTGGAAAAGTCAAATCAGTAATATACACTATTGAGTTTCAAAAGCGCGGACTCCCACATGCTCACATATTGGTTTTCCTTGAGACTAATTATAAGTGTGTCTGTCCTAATGATATTGACAAAATAATATCTGCCGAGATTCCAGATAAAGATAAAGAGCCTGAGTTGTTTAAAGTGGTATCTTCATTGATGATTCATGGTCCATGCGGCGCTCAAAATAAAAAATCTCCATGCATGCATAATGGAAAGTGTTCAAAACATTTTCCAAAAAAATTTGCTGATTCTACCGTTATTGATGAAGATGGATATCCGGTATACAAAAGGAGAGACAATGATGTGTTTATTCAAAAAGGTGACTCATTTGTAGATAACAGGTTTGTGGTTCCTTATAATAAACATTTGTTATTGAAGTATAATGCTCATATAAATGTGGAGTGGTGCAATCAGTCACGGTCAATTAAATATCTTTTTAAATATGTCAACAAAGGGCATGATCGTGTCACTGTTGCCTTTTATAGCAGTGGAAATGAGCAAAATAAATCTGATTGTTTGGATGAAATAAAGATGTACTACGACTGTAGATATTTGTCAGCATGTGAAGCTGTTTGGAGAATATTTTCTTTTGATATTAATTATAGAGAACCATCAGTGGAACGACTCAATTTTCATTTAAAGAATGAGCAACATGTGATATATGATGATTATGCTGACATTCAGGATGTTGTGAACAAAAAATATGTTCATTGTACAAAATTTTTGGCATGGATGGATGCCAACAAAATATATCCTGAAGCAAAAAATCTTACATACAGTCAATTTCCAACAAAGTTTGTGTGGAAAGTTGAAGAACATAAATGGGCTCCACGAAAACAAGGATTTGCAATTGGAAGACTTCATTTTGTTCCCCCTGGATCTGGTGAGATATTTTATTTGAGAACTTTGCTAAATTATGTGAAGGGTCCTACATCTTTCGAAGAAATAAAAACAGTTAATAATGATACAAAAAAGACTTTTAAGGAGGCTTGCTATGCATTGGGATTTTTGGATGATGATAAGGAATACATAGATGCAATTGTGGAGGCAAGCCAATGGGGTACAGGAGAATATTTGCGCCTATTGTTTGCAACTTTATTATTGTCAAAGCAAATATCTCGCCCAGATTTTGTTTGGAATAACACTTGGGAGTATTTGTGTGATGATATCTTACATAAGCAACGACGCCTTCTTCACATTGAAGATTTGGTCTTGACTCCCGATCAACTGAAAAGCTACGCTTTAGCTGAAATAGAGACATTCTTACAAAGTAATAACAAGAGTTTAGAAGATTATCCTGAAATGCCTCAAGCAGATGTGTCATTAATACCCAAGAGAAATAATACATTGATTTATGATGAGTTGAACTATGACAGAAAATCTTTGGTTGAGGAGCATCGTAGATTAATGTCAACAATGACTGTTGAACAAAAAGGAATATATGATCGTATCATGAAAAGGGTAAACGAAAATAAACCAGGATTTTTTTTCCTTTATGGATATGGAGGAACTGGAAAAACTTATATTTGGAGATCAATGTCAGCAGCATTAAGATCAAAGGGTGAGATTGTTATAACAGTAGCTTCAAGTGGGATAGCTGCATTGCTTATTCCAGGAGGGAGAACAGCACACTCAAGGTTTTGCATACCTATAAATGTTGATGAATGCTCAACATGCGAAATAGCTCCAAAAAGTGATTTGGCCGATTTAATAGCCAAGGCAAAGATGATCATATGGGATGAAGCACCAATGATGCATAAGCATTGTTTTGAAGCTGTTGATCGCACTTTAAGGGATATTCTTCGATCTTATAATAATGGAAGTTTAGATATCCCATTCGGTGGAAAAGTAGTGGTTTTGGGTGGAGATTTTCGCCAAATCCTTCCTGTAATACCTAAAGGAACTAGACAAGTCGTTGTTCATGCTACTATCAATTCTTCCTATCTTTGGAATTTTTGTGAAGTTCTTACATTAACTACAAACATGAGACTTCTAACTGGAAGTTCAACGTCTGATATTGAAGAAAGAACGGAATTTTCTCGGTGGATTTTGGGAATTGGTGATGGAAGTATTGGAGAAACTAATGATGAAGATATCACAATCAATATACCAAACAATTTTCTAATTCCAAGTTTTGGTGATCCACTTGCCGCTATTGTTCAAAACACATATCCAAATCTTTTCCAAAATATGAGTGACCAGACATTTTTTCAAGATAGGGCTATATTAGCTCCTAAGAATACAATTGTTGACTCAATCAATGATTACATGCTGGATTTAATAAGTGGAAAAGAAATAATATATTTGAGTTTTGATTCTCCGTATTATAAAAACTCTGATGTGGACATCCCAAATGATATACACACTCCTGAATTTTTGAACACAATTATTTCTTCTGGACTTCCAAATCACAAGTTAAGATTAAAAGTTGGAGTACCAGTAATGTTATTGAGAAATATTGAACAATCTTTAGGTTTGTGTAATGGAACACGATTAATAATTACAAAAATGGGAAAATATGTCGTTGAAGCAAAGGTCATTTCAGGAAGCAATATTGGTCAAAAAGTTTATATTCCAAGGTTATCATTGACTCCTTCTGATAAGAGAATCCCTTTCAAATTCCAACGGCGGCAATTTCCATTAGCTGTTTCATTTGCAATGACTATCAATAAAAGTCAAGGACAATCACTCAAACATGTTGGAGTATATCTACCACAACCAATTTTCTCTCATGGACAACTATATGTTGCCATAACACGGGTTACTTCAAAAAAAGGGTTGAAGATACTGGTGACTAATGATGAATGTGAAGATATAGATACAACATCCAATGTAGTTTACAAAGAAATATTTAATAATATTCTTTAG 6450 0.3443 MDIPSMITPVAQICGGKIEINLKVRVIHLWIIPDRINSAENGTLHMLLLDEKCGKIHATIRKNLMPQFKDKILEGSTYVFEKFLVALNDVSFRTTNHKYKLNFMGSTNLFKVNAPEIPLHHFEFMSFLDILSSTKEDKLLDIIGHVVEKNNIKEIEKNGTKVMDITLEDLDNNRIHCTLWSEFAEMMEQFLEKHDSSHSVIIILQICKLKKYYGKMGVSNSFFGTKMFLNTDIPAINDYKLRMTEENVDLTQGVSQMIGPTIIPLADDLLQTKKMTIEDLIESTEKCFGSVLVRTCELDTDAGWFYQACSKCASKINIIEGKLYCDRCKMPKTAVPRFKVHIQVIDKTGSTTFILFDRIVSQVLGRNVQDLLDSMGQGSNANAYPSDLDTFLDKQILFKVEVSDGNIFQNWRSYTVKKLTEDTDIIKQFISINGIKITNNEEKAEHVEEVTRLADEKPVEIIERGNSKTENEVVVLGKRKDRSLESLDTIDLEEKQLGVAEIQRLNRLKRKQQLDLKQNQHGKNKEESQRLNQLKRKQQLSDIDSFIENHNEYNNMVPITNGEESDIPSNSEKQHGENDAEIQRFNRLKRKQQLDWKQIDSSIENHNEYNNRVSITNGEESDISSNSEKQHGENDAEIQRFNRLKRKQQLDLKQIDSSIENHNEYNNMVSITNGEESDIPSNSDIMSMVENDNELNTMVCMTNGEESNVPSNSGIQFPLQIDNEQLDDTAKSDSQYLNMGHPICVCEFCGALMWYEERVQKQYRPLTPKFSMCCMQGKIVIAPYPSLPQSLHDLYHKHDRRSKFFLENIRSFNSMFAFTSMGGKINKEINNGNAPPIFVMNGENFHQIGSLLPLPGNQPKFSQLYIYDTDNEITNRMAVVRMDGEDFELKSTIVSDIREVLDNFNPYVKTYRIIRDTITKQNAPTMKLRILRKRGCDGRRYNLPTASEVAALVVGDFDSVDFDRDVVVETQSGLLQRISVFEPAYLPLQYPLLFPRGEDGFRKDIPYNEDTNTSTSKRKFVTQKEWVAYKIQQRDTNTSTLLFSKRLFQQFLVDSFSAIESSRLKWIRDHQKDLRAEIYKGLTEAILRGETNPTSSGKRIVLPSTFVGGARYMIQNYQDAMAICGWTGYPDLFITFTCNHKWPELVDFLKTYHLNPEDRPDLVSRLFKIKLDQLIKDIKKGTIFGKVKSVIYTIEFQKRGLPHAHILVFLETNYKCVCPNDIDKIISAEIPDKDKEPELFKVVSSLMIHGPCGAQNKKSPCMHNGKCSKHFPKKFADSTVIDEDGYPVYKRRDNDVFIQKGDSFVDNRFVVPYNKHLLLKYNAHINVEWCNQSRSIKYLFKYVNKGHDRVTVAFYSSGNEQNKSDCLDEIKMYYDCRYLSACEAVWRIFSFDINYREPSVERLNFHLKNEQHVIYDDYADIQDVVNKKYVHCTKFLAWMDANKIYPEAKNLTYSQFPTKFVWKVEEHKWAPRKQGFAIGRLHFVPPGSGEIFYLRTLLNYVKGPTSFEEIKTVNNDTKKTFKEACYALGFLDDDKEYIDAIVEASQWGTGEYLRLLFATLLLSKQISRPDFVWNNTWEYLCDDILHKQRRLLHIEDLVLTPDQLKSYALAEIETFLQSNNKSLEDYPEMPQADVSLIPKRNNTLIYDELNYDRKSLVEEHRRLMSTMTVEQKGIYDRIMKRVNENKPGFFFLYGYGGTGKTYIWRSMSAALRSKGEIVITVASSGIAALLIPGGRTAHSRFCIPINVDECSTCEIAPKSDLADLIAKAKMIIWDEAPMMHKHCFEAVDRTLRDILRSYNNGSLDIPFGGKVVVLGGDFRQILPVIPKGTRQVVVHATINSSYLWNFCEVLTLTTNMRLLTGSSTSDIEERTEFSRWILGIGDGSIGETNDEDITINIPNNFLIPSFGDPLAAIVQNTYPNLFQNMSDQTFFQDRAILAPKNTIVDSINDYMLDLISGKEIIYLSFDSPYYKNSDVDIPNDIHTPEFLNTIISSGLPNHKLRLKVGVPVMLLRNIEQSLGLCNGTRLIITKMGKYVVEAKVISGSNIGQKVYIPRLSLTPSDKRIPFKFQRRQFPLAVSFAMTINKSQGQSLKHVGVYLPQPIFSHGQLYVAITRVTSKKGLKILVTNDECEDIDTTSNVVYKEIFNNIL 2149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi973g00009 2149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1663 1856 IPR027417 -
Vivi973g00009 2149 Pfam Domain of unknown function DUF223 46 135 IPR003871 -
Vivi973g00009 2149 CDD RPA1_DBD_B_like 141 243 - -
Vivi973g00009 2149 CDD RPA1_DBD_A_like 22 107 - -
Vivi973g00009 2149 PANTHER UNCHARACTERIZED 1071 2126 - -
Vivi973g00009 2149 MobiDBLite consensus disorder prediction 556 578 - -
Vivi973g00009 2149 Pfam Helitron helicase-like domain at N-terminus 1026 1208 IPR025476 -
Vivi973g00009 2149 Gene3D - 2061 2133 IPR027417 -
Vivi973g00009 2149 Gene3D - 266 430 IPR012340 -
Vivi973g00009 2149 MobiDBLite consensus disorder prediction 608 623 - -
Vivi973g00009 2149 SUPERFAMILY Nucleic acid-binding proteins 275 421 IPR012340 -
Vivi973g00009 2149 Coils Coil 517 537 - -
Vivi973g00009 2149 SUPERFAMILY Nucleic acid-binding proteins 121 240 IPR012340 -
Vivi973g00009 2149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1803 2147 IPR027417 -
Vivi973g00009 2149 Gene3D - 1664 1845 IPR027417 -
Vivi973g00009 2149 Gene3D - 116 251 IPR012340 -
Vivi973g00009 2149 CDD SF1_C_RecD 2078 2121 - -
Vivi973g00009 2149 MobiDBLite consensus disorder prediction 513 533 - -
Vivi973g00009 2149 CDD RPA1_DBD_C 297 423 IPR047192 -
Vivi973g00009 2149 MobiDBLite consensus disorder prediction 513 538 - -
Vivi973g00009 2149 MobiDBLite consensus disorder prediction 608 635 - -
Vivi973g00009 2149 FunFam ATP-dependent DNA helicase 2061 2126 - -
Vivi973g00009 2149 Pfam Replication factor-A C terminal domain 303 405 IPR013955 -
Vivi973g00009 2149 SUPERFAMILY Nucleic acid-binding proteins 7 112 IPR012340 -
Vivi973g00009 2149 Pfam PIF1-like helicase 1667 2031 IPR010285 GO:0000723|GO:0003678|GO:0006281
Vivi973g00009 2149 Gene3D - 6 113 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi973g00009 22 403 Core DNA Replication Machinery Family AT5G08020 21.914 2.51e-14 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi973g00009 - - vvo:131638525 4313.45