Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi972g00025 ATGACATTGACCTTGTTCACTAACACCTATACAACACACAACCAAAAAAGATGGCACAATGCTTTCATCACAATCTATTGCTCTAGAGCTTTCAACAAACCTAAAATCACACCTATACCAACTTTCACTGTCCTTGATATCAACTCACCTCACTCTTTCACCATTGATCAACAAACTCTTATTCATCTTGTCAAAGACAAAAATATTGAAACCCTTCATGCACATGCTGGAGGACTTGAAGGTATTGCTTCATCTCTTCAAACCAATACCGAGTTTGGTATCAACCATGATTCTGAGGACATTGCAATCAGAAAACAAGTGTTTGGTTCCAACACATATAAAAAACCACCTTCTAAAAGTTTCATTCATTTTGTTCTTGAAGCATTTAAGGATGTCACAATTCTAATCCTTTTGGTTTGTGCTTCTCTTTCACTTGGCTTTGGCATCAAGGAACATGGAATCAAAGAAGGTTGGTATGATGGTGGTAGCATTTTTCTAGCTGTTTTCATTGTTATTTCAATGTCATCCATAAGTAACTTCAAACAAAACAAACAATTTGATAAATTGTCTCAAGTTAGCAATAATATTCAAATTGACTTGGTTCGAAGTGGTCGCAGACAAAAGGTATCAATCTTTGAGATTGTTGTTGGTGATATTGTTTGTTTGAAGATCGGTGATCAAGTACCGGCCGATGGATTGTTCGTAGATGGACATTCACTCAGAGTTGATGAATCCAGTATGACTGGTGAAAGCGATCATGTAGAGATTAGTAAACACCATCATCCTTTTTTGTTTTCCGGAACAAAGGTTGCTGACGGATATGCCAAAATGCTAGTTACATCGGTCGGCATGAACACAACATGGGGACAAATGATGTCTTCTATAAGCAATGACAATGATGAAGAAACACCTTTGCAGACAAGGTTGAATAAGCTAACATCATCTATTGGAAAGGGAGGTTTGGCTGTGGCGTTTTTAGTTCTTGTTGTATTGCTCATTCGATATTTCACCGGGAACACAGAGACTGATAACGGAGTTCGAGAATTCAACGGAAGAAAGACTAGTTTTGATGAAGTGATGAATGCAGTGATTGGAATTATTTCGGATGCTGTTACTATTGTTGTTGTTGCTATCCCGGAGGGTTTGCCATTAGCTGTGACTTTGACTCTTGCTTACTCAATGAAGAAAATGATGGCTGATCAAGCTATGGTCAGAAAACTTTCTGCATGTGAGACTATGGGATCTGCTACTACTATTTGCACTGATAAAACAGGTACACTCACTTTGAATCAAATGAAGGTGACCAAATTTTGGCTTGGTCTAGAACCATTGGAAGAGGGTGCATATTTAAATGTTGATCCATTTGTTCTTCAATTGATCAAAGAAGGAGTTGCTCATAATACAACTGGTAGTGTTCATGAATCTAAATCAGACTCTGATTCAAAATTTGAGTTTTCTGGTAGTCCAACAGAAAAGGCAATATTATCTTGGGCTGTTTTGGAATTGAATATGGAGATGGAAACTTTGACAAAAAGTTGTTCTATTTTTCAAGTTGAGACTTTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTGAGAAGAAATGTTGACAACAAAATGAATGCACATTGGAAAGGAGCAGCAGAGATGGTTCTAAGAATGTGTTCAAAATACTATGATGCTTATGGTATTGTGAAACATCTTGATAACGAAACTATGTCGAAATTTGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGTATCGCTTTCGCATATGCTGAAGTTGAAGTTCAAGAGCTAGGAGATGAAGGAGAAAACAGCAAGATAGTGGTAAAAGACAATGGTTTAACATTGCTAGGACTTGTTGGTATTAAGGATCCGTGTCGTCCGGGGGTGAAGACCGCAGTGGAAGCTTGCCAACATGCTGGTGTGAATGTCAAAATGATTACAGGTGACAATATTTTCACTGCAAAAGCTATAGCATTTGAATGCGGGATTCTTCGAGCTAATCAAGACACAGATGAAACCGTGATTGAAGGGGAACAATTTCGCAACTTCACGCATGAAGAAAGGTTAGAGAAAGTTGAAAAAATCTGTGTGATGGCAAGATCATCTCCATTTGACAAACTTCTAATGGTTCAATGCCTAAAAGAAAAAGGGCATGTAGTTGCTGTAACAGGAGACGGTACAAATGATGCACCAGCATTGAAAGAAGCTGATATTGGACTTTCAATGGGAATTCAAGGTACAGAAGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTGAATTGGGGAAGATGTGTTTACAACAACATCCAAAAATTCATTCAATTTCAATTAACAGTGAATGTAGCTGCACTTGTTATCAATTTTGTAGCAGCAGTTTCAGCAGGTGAAGTTCCATTAACAGCAGTTCAATTATTATGGGTCAATTTGATTATGGATACATTAGGTGCTTTGGCTCTTGCAACTGAAAAACCAACTAAGGAATTAATGGATCAAAAACCTGTTGGTAGAACAAAGCCTCTTATTACCAACATTATGTGGAGGAATCTTCTGTCACAAGCTTTCTACCAAATAGTAATTTTGCTGACCCTTCAGTTCAAAGGGGAGGCTATTTTTGGGGTGACATCAAAGGTGAATGACACATTGATTTTCAATACATTTGTTCTTTGTCAAGTGTTTAATGAGTTCAATGCAAGGAAGTTGGAGAAGAAGAATGTTTTTGAAGGGATATTTAGAAGCAAATTGTTTATGGGAATTGTTGGTGTGACATTGGTGCTTCAAGTAGTGATGGTTGAGTTTTTGAAGAAATTTGCTGATACAGAAAGGTTGAATTGGAGAGAATGGATTATCTGTATTGGTCTTGCTTCTGCTTCTTGGCCAATTGGTTTTGTGGTGAAGTTGATTCCTGTCTCTGATAAACCACTACTCGATTTTCTCAGTTTGAAGAAGAGATTATGA 3006 0.3726 MTLTLFTNTYTTHNQKRWHNAFITIYCSRAFNKPKITPIPTFTVLDINSPHSFTIDQQTLIHLVKDKNIETLHAHAGGLEGIASSLQTNTEFGINHDSEDIAIRKQVFGSNTYKKPPSKSFIHFVLEAFKDVTILILLVCASLSLGFGIKEHGIKEGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNNIQIDLVRSGRRQKVSIFEIVVGDIVCLKIGDQVPADGLFVDGHSLRVDESSMTGESDHVEISKHHHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISNDNDEETPLQTRLNKLTSSIGKGGLAVAFLVLVVLLIRYFTGNTETDNGVREFNGRKTSFDEVMNAVIGIISDAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPLEEGAYLNVDPFVLQLIKEGVAHNTTGSVHESKSDSDSKFEFSGSPTEKAILSWAVLELNMEMETLTKSCSIFQVETFNSKKKRSGVLLRRNVDNKMNAHWKGAAEMVLRMCSKYYDAYGIVKHLDNETMSKFESIIQGMAASSLRCIAFAYAEVEVQELGDEGENSKIVVKDNGLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNIFTAKAIAFECGILRANQDTDETVIEGEQFRNFTHEERLEKVEKICVMARSSPFDKLLMVQCLKEKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDQKPVGRTKPLITNIMWRNLLSQAFYQIVILLTLQFKGEAIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFRSKLFMGIVGVTLVLQVVMVEFLKKFADTERLNWREWIICIGLASASWPIGFVVKLIPVSDKPLLDFLSLKKRL 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi972g00025 1001 Gene3D - 430 630 IPR023299 GO:0000166
Vivi972g00025 1001 PRINTS H+-transporting ATPase (proton pump) signature 576 594 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi972g00025 1001 PRINTS H+-transporting ATPase (proton pump) signature 729 745 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi972g00025 1001 PRINTS H+-transporting ATPase (proton pump) signature 761 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi972g00025 1001 NCBIfam calcium-translocating P-type ATPase, PMCA-type 62 986 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vivi972g00025 1001 Gene3D - 98 296 - -
Vivi972g00025 1001 SMART Cation_ATPase_N_a_2 73 149 IPR004014 -
Vivi972g00025 1001 ProSitePatterns E1-E2 ATPases phosphorylation site. 422 428 IPR018303 -
Vivi972g00025 1001 Gene3D - 127 977 - -
Vivi972g00025 1001 Gene3D - 417 774 IPR023214 -
Vivi972g00025 1001 Pfam Cation transporter/ATPase, N-terminus 75 144 IPR004014 -
Vivi972g00025 1001 FunFam Calcium-transporting ATPase 430 630 - -
Vivi972g00025 1001 PRINTS P-type cation-transporting ATPase superfamily signature 645 655 - -
Vivi972g00025 1001 PRINTS P-type cation-transporting ATPase superfamily signature 623 634 - -
Vivi972g00025 1001 PRINTS P-type cation-transporting ATPase superfamily signature 420 434 - -
Vivi972g00025 1001 PRINTS P-type cation-transporting ATPase superfamily signature 753 765 - -
Vivi972g00025 1001 PRINTS P-type cation-transporting ATPase superfamily signature 243 257 - -
Vivi972g00025 1001 PRINTS P-type cation-transporting ATPase superfamily signature 729 748 - -
Vivi972g00025 1001 NCBIfam HAD-IC family P-type ATPase 363 440 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi972g00025 1001 NCBIfam HAD-IC family P-type ATPase 701 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi972g00025 1001 SUPERFAMILY Calcium ATPase, transmembrane domain M 73 986 IPR023298 -
Vivi972g00025 1001 SUPERFAMILY HAD-like 418 834 IPR036412 -
Vivi972g00025 1001 FunFam Calcium-transporting ATPase 168 296 - -
Vivi972g00025 1001 SUPERFAMILY Calcium ATPase, transduction domain A 198 294 IPR008250 -
Vivi972g00025 1001 Pfam haloacid dehalogenase-like hydrolase 417 743 - -
Vivi972g00025 1001 FunFam Calcium-transporting ATPase 746 988 - -
Vivi972g00025 1001 SFLD Haloacid Dehalogenase 402 782 - -
Vivi972g00025 1001 CDD P-type_ATPase_Ca_PMCA-like 104 862 - -
Vivi972g00025 1001 PANTHER CATION TRANSPORTING ATPASE 43 987 - -
Vivi972g00025 1001 Pfam Cation transporting ATPase, C-terminus 814 984 IPR006068 -
Vivi972g00025 1001 Pfam E1-E2 ATPase 198 398 - -
Vivi972g00025 1001 FunFam Calcium-transporting ATPase 624 774 - -
Vivi972g00025 1001 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 427 627 IPR023299 GO:0000166
Vivi972g00025 1001 SFLD p-type atpase 402 782 IPR044492 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi972g00025 12 1000 Primary Pumps ATPases AT3G22910 67.729 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi972g00025 K01537 - gmx:100793918 1578.92