Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi972g00018 ATGTATCATCATCATCACCAAGCAAAAAATATTCACTCTTCTTCAAGAATGTCAATTCCATCTGAGAGGCACATGTTTCTTCAAACTGGGAATGGATCTAGTGATTCTGGACTTGTTCTTTCGACTGATGCTAAGCCTAGATTAAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTCAACCAGTTAGGTGGAGCTGACAAAGCTACTCCAAAAACAGTGATGAAACTCATGGGAATTCCGGGGCTTACCTTATATCATCTAAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAATAATAACGTGACACACAAAATAAACACGCATTCGGCTTCGGGAACTGATGAGAGACTTTCGGATCAAACCAATGGAACTCACATCAATAAATTAACCCTTGGACCGCAACCGAATAACAACAACAAAGATTTACACATAAGCGAGGCGCTGCAAATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCACAAGGAAAGTACCTTCAATCAGTGCTAGAGAAAGCTCAAGAAACACTTGGTAGACAGAACTTAGGAATAGTAGGACTTGAAGCTGCAAAAGTTCAACTTTCAGAGCTTGTCTCAAAAGTATCCTCACAGTGTCTAAATTCAACATTCTCAGAAATGAAGGAGTTACAAGGCTTTTGTCCTCAACAAATACAAATCACAAACCAACCAAACGACGGCTCGATGGACAGTAGTTGCTTAACATCGAGTGAACGATCACAAAAGGAACAAGAGATCATTCAAAATGGAGGGTTTGGTTTAAGACACTTCAACAACAACAACAACAACAACAGTCATGTGTTCATGGAAAGAAAAGAACAACAATTAACCGAAGCGGCGGCTTCTATGCAAAACCTTAGAAACACTGAGGTACTAAAATGGTGTGTTGATGAAGTGAAAAAGAACAGTAATTTTCTCACCCCTTTAGAAAGAAATCATGGAAACTTGTCTATGAACATTGGAGTTGAACAAAATCACTCAGATGTTGTTGGTGAGTTTCAACACAGAAACACTGCAAGAACAGAAACAATGAAATCAGTGGATGATAATAATAATAAGATTCAACAACAACCTTCTAATTACTTCTCAGCTTCAAGATTGGACCTAAACAGTCGTGGAGATAATAATGAAGGTGCTACAAGCTGTAAACAGCTTGATTTGAATAGGTTCAGTTGGAACTGA 1272 0.3892 MYHHHHQAKNIHSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNNNVTHKINTHSASGTDERLSDQTNGTHINKLTLGPQPNNNNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSTFSEMKELQGFCPQQIQITNQPNDGSMDSSCLTSSERSQKEQEIIQNGGFGLRHFNNNNNNNSHVFMERKEQQLTEAAASMQNLRNTEVLKWCVDEVKKNSNFLTPLERNHGNLSMNIGVEQNHSDVVGEFQHRNTARTETMKSVDDNNNKIQQQPSNYFSASRLDLNSRGDNNEGATSCKQLDLNRFSWN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi972g00018 423 Gene3D - 44 102 - -
Vivi972g00018 423 FunFam Myb family transcription factor 44 102 - -
Vivi972g00018 423 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Vivi972g00018 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Vivi972g00018 423 Coils Coil 299 319 - -
Vivi972g00018 423 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Vivi972g00018 423 Coils Coil 156 176 - -
Vivi972g00018 423 Pfam MYB-CC type transfactor, LHEQLE motif 154 200 IPR025756 -
Vivi972g00018 423 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 309 IPR044848 GO:0003700
Vivi972g00018 423 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi972g00018 77 423 G2-like Transcription Factor Family AT3G04030 49.856 2.77e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi972g00018 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi972g00018 - - gmx:100810396 554.288