Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi96g00001 ATGGCACTTCCTTCAACAAAACCAAACCCCACTCTCACATTCATTTTTTCAACCTTTGTGCTATGCAGTACAACATTACTGTGTTGTGCTAGTGTTCCAACCAAAACAGAAGCTGGATTTGAGTTTCTTAAGGTTGCTCCATCGGAGTTTGTTGGGTCAGTGAATGATGTGGTTGATATTTTGCAACAGGTTACAAGTATTCTTTCGCAATTTGGTGGTGATGGGTTTGGTGATTCGCGTTTATCAAATGCTGTTTCTGATTGTATTGATTTGCTTGACCTTTCATCTGATGCTCTTACTTGGTCTGTTTCTGCTACTCAGAACCCCCAAGGTAAGCATAATAGTACAGGAAATGTGAGCTCTGATGTAAGAACATGGCTTAGTGCTGCACTTGCAAATCCAGAGACCTGCCAAAACGGATTCGAAGGTACAAATGGCATTGCAAGCACTTTAGTCTCCACTGGCCTAGGCCAAATGATGTCTCTTCTCACAGAGCTTCTCACACAAGTGAACCCTAACTCCGATAGCTTCGCAACAAAGCAAGCACAAAAAGGCCAGTTTCCTGCATGGTTCAAACGTGAAGACAGAAAGCTCTTGATAGCAAATGGTGTGGCTGTTGACGTAGTGGTTGCTAAGGACGGTAGCGGCAATTTTACGACGGTGATGGATGCGGTGCATGCAGCTCCTGATTATAGCATAAAACGGTTTGTGATTTATGTGAAGAGAGGTGTTTATGTTGAGAATGTTGAAATAAAGAAGAAGAAATGGAATCTTATGATGGTTGGAGATGGTATGAATGCGACAGTTATTTCGGGTAATCGGAGCTTCGTCGACGGGTGGACCACGTTCAGATCAGCTACCTTTGCTGTGAGTGGCAGAGGATTTATAGCAAGAGACATCAGTTTTCAAAATACTGCAGGTCCCGAGAAGCACCAAGCAGTGGCATTAAGATCCGACTCCGACCTTTCCGTATTTTATCGATGCGGAATTTTTGGTTACCAAGATAGTCTCTATACTCACACCATGCGTCAATTCTATCGCGAATGCAAAATCAGCGGCACCGTGGATTTCATCTTTGGCGATGCCACGACAGTTTTTCAAAACTGTCAAATACTAGTCAAGAAAGGGTTACCAAATCAAAAGAACACCATCACTGCTCAAGGGCGAAAAGATCCCAACGAACCAACAGGTTTCTCAATCCAGTTCTGCAACATCACTGCTGATACCGATCTTCTTCCTTTGATCAACTCCACCTGGACGTATCTTGGAAGACCCTGGAAACAATATTCGAGAACAGTTTTCATGCAATCTCATATAAGTGATGTGTTGCGGCCGGAAGGGTGGCTAGAGTGGAACGGAGATTTCGCGTTGGATACATTATACTATGCGGAGTACATGAATTATGGTCTCGGAGCCGGATTGAATAAGCGAGTTAAATGGCCGGGATATCATATTATAAATGATTCAAGTCATGCTAATAACTTCACAGTAACACAATTTCTTGAAGGGAATCTATGGTTGCCTACAACAGGTGTGTCCTTTACTGCTGGACTAGAAGTTTGA 1563 0.4319 MALPSTKPNPTLTFIFSTFVLCSTTLLCCASVPTKTEAGFEFLKVAPSEFVGSVNDVVDILQQVTSILSQFGGDGFGDSRLSNAVSDCIDLLDLSSDALTWSVSATQNPQGKHNSTGNVSSDVRTWLSAALANPETCQNGFEGTNGIASTLVSTGLGQMMSLLTELLTQVNPNSDSFATKQAQKGQFPAWFKREDRKLLIANGVAVDVVVAKDGSGNFTTVMDAVHAAPDYSIKRFVIYVKRGVYVENVEIKKKKWNLMMVGDGMNATVISGNRSFVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATTVFQNCQILVKKGLPNQKNTITAQGRKDPNEPTGFSIQFCNITADTDLLPLINSTWTYLGRPWKQYSRTVFMQSHISDVLRPEGWLEWNGDFALDTLYYAEYMNYGLGAGLNKRVKWPGYHIINDSSHANNFTVTQFLEGNLWLPTTGVSFTAGLEV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi96g00001 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 153 IPR035513 -
Vivi96g00001 520 SUPERFAMILY Pectin lyase-like 203 517 IPR011050 -
Vivi96g00001 520 Pfam Pectinesterase 207 504 IPR000070 GO:0030599|GO:0042545
Vivi96g00001 520 Pfam Plant invertase/pectin methylesterase inhibitor 78 153 IPR006501 GO:0004857
Vivi96g00001 520 PANTHER PECTINESTERASE 22 509 - -
Vivi96g00001 520 CDD PMEI-like_4 11 174 - -
Vivi96g00001 520 SMART PMEI_2 10 169 IPR006501 GO:0004857
Vivi96g00001 520 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Vivi96g00001 520 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Vivi96g00001 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 171 IPR035513 -
Vivi96g00001 520 NCBIfam pectinesterase inhibitor domain 63 147 IPR006501 GO:0004857
Vivi96g00001 520 Gene3D - 205 520 IPR012334 -
Vivi96g00001 520 FunFam Pectinesterase 201 518 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi96g00001 40 518 Carbohydrate Esterase AT3G43270 64.694 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi96g00001 K01051 - gmx:100777500 776.163