LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi969g00004	ATGAAAAATATGGATTTCTCATTCACACTATTTCTTCTAGTATTGATCTTTTCATTCCAATCTTCATCTTCTTCTTCATCATCATCCTTGAGAAAAGGTTCATCCATCTCAGTAGAAAATCCAGAAGACAAAATCATCTCACCAAATGGCATGTTCACTGCTGGCTTTACTTCCATTGGTGAAAATGCCTACTCCTTTGCCATATGGTTCACAGAACCAAATTCCCTCAAACTCAACAACACAATCATTTGGACGGCGAATCGAGACCAACCGGTTAACGGAAAACGATCCAAACTCACCCTTTTAAACACAGGAAACATTGTTCTTCTTGATGTTTCTCTAAACAATGTTTGGTCTTCAAACACTGCATCATTGAAACCATTAGAGTTGCATCTCAAAAACGATGGAAATCTTGTGTTGCGTGAGCTGCAAGGAACCGAAATTCTCTGGCAGAGTTTTGATTCTCCAACAGATACTCTCCTTCCTGGTCAACCTCTCACAAGATATACAAAGCTTGTTGCTGCAATAAGTGAGACTAATCATTCATCTGGCTTCTACATGTCGTTTTTCGACGATGAAAATATTTTCGGCCTTCATTACAACGGCCGCGATGTTTCTAGCTCGTATTGGCCAAGACCTTGGCTTCTGAGTTGGGATGTTGGCAGATCAAATTTCAACAGTAGCAGAACTGCAGTGTTGGACTCTCTTGGTAACTTCCATTCTTCTGATAATTTCACTTTTTCGACTTCTGATTATGGATCTGTGCTGCAAAGAATAATGAAACTTGACTCTGATGGTATGGTGAGAGTTTATAGCAGAAATAATGTGTCAAAGAATTGGTATGTTTCGTGGCAAGCCTTTTCTGGTACTTGTTTGGTTCATGGAATTTGTGGAGCTAATAGTACATGTAGTTATAGTCCTGAGTATGGAAGAAAGTGCTCTTGTATTCCAGGGTATAAGATGAGGAATCATAATGATTGGTCTTATGGTTGTGAACCTATGTTTGATTTCACTTGCAATAAAAGTGAGTCAACCTTTTTAGAGATGAAGAATGTTGAGTTTTATGGTTATGATTTTCATTATATTGAAATTTGTAACTATAGTACTTGTGAGGATTTATGCATACAAGATTGTAATTGTGTTGCATTTCAACATTCTTTTTGGGAGAAAAAGGGGTTTTATAGGTGTTTTACAAAAACACAATTGCAAAATGGAAGGTTTGTACCTTCTTTTGAAGGATCAACCTACTTGAGATTACCTAAAGGTAATAGCTTCTCTAAAGGAGAATCTTCGACTCCGAGTAATCATCTTTGTTTAGAAAAACTTGAAAGAGTTTATGTCAAAGAAAGCGAAAACCATTACGTAAAGTTTTTTCTCTGGTTCGTCACTGTGATCGGAGCTTTTGAAGCGGTCTGCATTTTTTCCGTTTGGTGTTCTCTATTCAGGTCGCGCCAAAAGACTAATGCAGACCAACACCGTTACCACCTTGCCGAAATAGGGTTTAGAAAATTCAGTTACTTGGAGCTCAAGAAAGCAACAAAAGGGTTCAGTCAAGAGATCGGAAGAGGCGGGGGAGGCGTTGTATACAAAGGCGTATTATCTGATCAAAGACACGCCGCGATAAAGAGACTTTACAATGCTCAACAAGGAGAAAGTGAGTTTCTCGCCGAAGTAGGCATCATTGGAAGACTTAATCACATGAACTTGATTGAAATGTGGGGATATTGCGCCGAGGGAAAATATAGACTATTGGTTTATGAGTACATGGAAAACGGTTCTTTAGCCGAAAATCTATCATCTAATAAACTTGATTGGAGTAAAAGATACAAAATTGCTTTAGCAATAGCAAGAGTTTTAGCATATCTACATGAAGAATGTTTGGAGTGGATTTTACATTGTGATATAAAGCCACAAAACATACTTCTTGATTCTAACTTCCAACCCAAGTTAGCGGATTTCGGATTGTCTAAGCTACAAAATAGAAACAATCTCAACAACTTAAGCGTCTCTACGATTCGAGGAACAAGAGGTTACATGGCACCTGAATGGATTTTCAACTTGCCAATAACATCTAAAGTTGATGTTTATAGCTATGGAATTGTTGTGTTGGAGATGATAACAGGTAAGAGTCCGACAACAGGTTTCAAAGTATTGAATGGTGAAAAGGAAAGTGTTGGGAGGTTGGTTACTTGGGTGAGAGATAAAAAAGGGAGTAGTGTTGGTTGGTTGGAGGAAATTGTTGATGATGAAATTGGATTAGGTTATGATAAAAGTAAGATGGAGATGTTGGCTAAAGTTGCTTTGGATTGTGTTGTGGATGAAAGAGATTCAAGGCCTACTATGAGTAGAGTTGTTGAGATGCTTCAATACCATGGAACTGATGGTCAGTGA	2391	0.3806	MKNMDFSFTLFLLVLIFSFQSSSSSSSSSLRKGSSISVENPEDKIISPNGMFTAGFTSIGENAYSFAIWFTEPNSLKLNNTIIWTANRDQPVNGKRSKLTLLNTGNIVLLDVSLNNVWSSNTASLKPLELHLKNDGNLVLRELQGTEILWQSFDSPTDTLLPGQPLTRYTKLVAAISETNHSSGFYMSFFDDENIFGLHYNGRDVSSSYWPRPWLLSWDVGRSNFNSSRTAVLDSLGNFHSSDNFTFSTSDYGSVLQRIMKLDSDGMVRVYSRNNVSKNWYVSWQAFSGTCLVHGICGANSTCSYSPEYGRKCSCIPGYKMRNHNDWSYGCEPMFDFTCNKSESTFLEMKNVEFYGYDFHYIEICNYSTCEDLCIQDCNCVAFQHSFWEKKGFYRCFTKTQLQNGRFVPSFEGSTYLRLPKGNSFSKGESSTPSNHLCLEKLERVYVKESENHYVKFFLWFVTVIGAFEAVCIFSVWCSLFRSRQKTNADQHRYHLAEIGFRKFSYLELKKATKGFSQEIGRGGGGVVYKGVLSDQRHAAIKRLYNAQQGESEFLAEVGIIGRLNHMNLIEMWGYCAEGKYRLLVYEYMENGSLAENLSSNKLDWSKRYKIALAIARVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLQNRNNLNNLSVSTIRGTRGYMAPEWIFNLPITSKVDVYSYGIVVLEMITGKSPTTGFKVLNGEKESVGRLVTWVRDKKGSSVGWLEEIVDDEIGLGYDKSKMEMLAKVALDCVVDERDSRPTMSRVVEMLQYHGTDGQ	796

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi969g00004	796	SMART	serkin_6	514	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi969g00004	796	SMART	blect_4	27	156	IPR001480	-
	Vivi969g00004	796	Gene3D	Phosphorylase Kinase; domain 1	477	588	-	-
	Vivi969g00004	796	Pfam	Protein kinase domain	517	785	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi969g00004	796	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	630	642	IPR008271	GO:0004672\|GO:0006468
	Vivi969g00004	796	CDD	STKc_IRAK	533	789	-	-
	Vivi969g00004	796	PANTHER	OS07G0415500 PROTEIN	8	790	-	-
	Vivi969g00004	796	ProSiteProfiles	Protein kinase domain profile.	514	791	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi969g00004	796	ProSiteProfiles	PAN/Apple domain profile.	339	420	IPR003609	-
	Vivi969g00004	796	FunFam	Putative receptor-like protein kinase	589	794	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi969g00004	504	788	Trihelix Transcription Factor Family	AT5G38560	41.980	5.63e-64	225

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Vivi969g00004		Pkinase	5.1e-52	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi969g00004	-		-	mtr:11433991	1328.15

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