Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi968g00022 ATGATTCTTTCCATGAACGAAGCTCAAACTGAACTCACAATTCCTCACTTGTTTAGATGCCCCATAAGCCTTGATTTGTTGGAAGATCCAGTGACTTTAACCACTGGCCAAACCTATGATAGATCAAGCATAGAGAAATGGATTTCCGCAGGTAATTTCACATGTCCTGTAACAATGCAGAAGCTTCATGATTTATCTTTTGTTCCTAATCACACTCTTCGCCATTTGATCAATCAATGGCTTCAGCTTGGTTCACAGTTTCATCACTCTTGTAACAATAACAATACCATAGATTACCTAGCTACAATCAAACACACCCTTGAATCTCATGATTCATCATCTCTAGAAACCAAGCTCAAAGCACTTGAGAAAATCAGTGTTCTTTCTGATGAGTATTGTTCTTTCAGAAAATCTTGCTTCCAACAGCTTAGTTTCTTAGCTTTACTTTTGGAACTTGTTTTTGGTTTATCAGATTCACATCTCTCAGAAAATTGTTACATGGAGTTTGTTGAGTTAGCACTTTCTTGCATTGTTAAACTGTTGCCTATTGTAAATTTGGAACCCTTAAATATCATCAAAGATGAATCAAAGTTGAAAAAGTTCATATTTTTGTTTGAAAAAGGAACTATTTCAATGAAGACTAGTTTGTGTCTTGTTATAGATTACTCAACAACAGCATCACAAACAGAAGAGGTTTGTGAAATACTAGGAAACTCACAAAAACTAGTCCATGAAATTGTTCAAGTTATTGTTAACAAGAGTTCTGATAATCTTTCTGAGGCTGCAGTTAAGGCCTTATCAGCATTATGTTCATTGGAATCAAACAAAGAGAGTTTAGTGAAAGGAGGGGCAATAGATGGAATCATAAGATACATTTCAAGATGTGATAATACAAGGCAGAAGAATTTGGCTCCACTAGCAATGGCAACAATGATGAAGCTTTTGGTGTTGGAGAGTGGTAAAGAGGCATTGGTGAATCATGTGAATGGGATTGAGACATTGGTGAAGATGGTTTTCAAGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTTCAATTGTTTGTAGTGATTTTGGGAGTGCTAGAGAGGTGGCTATTGGAGCTGGTGTTTTGAGTCAGTTGTTGTTTCTTCTGCAGAGTCAGTGTGGTACTAAGACTAAAACTAAGGCAAGAATGTTGCTTAAGTTGTTGAGATCAAAGTGGAGTGAGGAATCAATGCATTAG 1233 0.3674 MILSMNEAQTELTIPHLFRCPISLDLLEDPVTLTTGQTYDRSSIEKWISAGNFTCPVTMQKLHDLSFVPNHTLRHLINQWLQLGSQFHHSCNNNNTIDYLATIKHTLESHDSSSLETKLKALEKISVLSDEYCSFRKSCFQQLSFLALLLELVFGLSDSHLSENCYMEFVELALSCIVKLLPIVNLEPLNIIKDESKLKKFIFLFEKGTISMKTSLCLVIDYSTTASQTEEVCEILGNSQKLVHEIVQVIVNKSSDNLSEAAVKALSALCSLESNKESLVKGGAIDGIIRYISRCDNTRQKNLAPLAMATMMKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVGILSIVCSDFGSAREVAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWSEESMH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi968g00022 410 SUPERFAMILY ARM repeat 112 400 IPR016024 -
Vivi968g00022 410 SUPERFAMILY RING/U-box 8 83 - -
Vivi968g00022 410 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Vivi968g00022 410 Pfam U-box domain 14 82 IPR003613 GO:0004842|GO:0016567
Vivi968g00022 410 PANTHER WDSAM1 PROTEIN 11 407 IPR045185 GO:0061630
Vivi968g00022 410 Gene3D - 218 408 IPR011989 -
Vivi968g00022 410 FunFam RING-type E3 ubiquitin transferase 14 85 - -
Vivi968g00022 410 CDD RING-Ubox_PUB 15 62 IPR045210 -
Vivi968g00022 410 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Vivi968g00022 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi968g00022 12 406 U-box Gene Family AT3G19380 32.134 1.56e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi968g00022 - - gmx:100815247 541.191